Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01084 ATGGACGAAGATTTGCTCAAGCGCTACACCGATTGCGTTTATTTCTTGGCCTCTCCCCTCACTTGCAAGAAGGGGGCTGAATGTGAGTATCGGCATAATGAGATTGCCAGGCTTAACCCTAGGGATTGCTGGTACTGGCTATCTGGCCAATGCCTTAATCCAACGTGTGCTTTTAGACACCCTCCATTGGATGGGCATACTGGAGTGCCAGTTCCATCTGAACCTACTCAAACTTCATTACCTGCAAACAAGACAATGGTTCCCTGTTATTTTTTCTTCAATGGATTTTGCAACAAAGGTGACAGATGCTCATTTTTGCATGGGCCTGATGATAGCATTTTTACTGTAAAACCGGTGAAGAATGACAATGGAAGCACTGATGCACTCAACCTAGAAAATAAAACATCATCTGGAAATAGAACAGGCGTAGCATCAACACCAACTGACCGATCTGTAGCTGCTCCAAAGAATTTGCCTGATCTTAAACTTCAGCCTAAGGAAGATCATCAGCTAGAATTACCCAAAAATGTTAAGCTGCAAGGTGATTGCCTAGAGATATCTGCTTTAGAAAATAAAGAAGCTGCTGTGAGTAGGTCAGACTCTTCATTTCCAGATGATGGCTTTGTTCATAATGTACCTCATTTATGCACTGAGCAGAGTTCAGAGGAGCAAGTAAATAGTCACATAGAGCCTGAGGAGCGGTGGGAATCATCCCCTCATTCCCCTGGATTTGATGTTCTTGTTCATGATGAATTGGAGAACATGGGTTATGAGGAAGATTCTGAATATTTACCAGTGCTTGATAGGGATGAGCAAGAGCTGAATGACCAATACTTCGGGTATGAATTTAAAGATCCAGTTGAGTGTGATACTATGTGCCCAGAAGCTGATATTCTGTATGAACAAGAAACATATGATGGTTATAGATGTTTAGATAGAGACCTTACTCATGCTAATGGCAGAACAGTTCATGCTTATTCCAGAGATGTATTCTTAGATTCTATATTGTCCAGGAAAAGGATTCGGACGTCAGCTGAGATGGCTGCTTATGACAAGAATTTAGATCTTCGTGACCATCTGAGGAGACGTAGAGAAATTAATGGTCCTCCTGTTACAGGTTTCTTAAGAAGACAAGAATCATCTCCTTTGATGGTGCGAAACCAGGAAAGGCATCAGAGGCATGGCATTGAGCAGCGGCCAAGTAGAAGATTGACATCACAACTGGGATATAGCGCTATAGATTCGATTGGAGAGGTTGAAACTCTTTCAATTGCTAACAAGCACAGGTTATTCAGGCATTCCCAGCAACATAGACCAAGGAAGCATTATAGAGAAAAACTACCTAAGCGGCAGTTTCTTTCATCCAAAATATCCAGGAAACCAGTTTTTAAACAAAGGGGATTTATTCACGAGTCCTCTACATTTTCAGGACCTAAGACTCTTGCAGAAATTAAAGAAGAGAAGAAGAAGAAGGCTGAAGGAAGTTTACATTGGAAAAGCACATCAACTGATTTCCAGGATCCCAAGCCTCTGAGTGAAATTCTCAAGGACAAAAGGACCATGGATCAGTGA 1572 0.4179 MDEDLLKRYTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGQCLNPTCAFRHPPLDGHTGVPVPSEPTQTSLPANKTMVPCYFFFNGFCNKGDRCSFLHGPDDSIFTVKPVKNDNGSTDALNLENKTSSGNRTGVASTPTDRSVAAPKNLPDLKLQPKEDHQLELPKNVKLQGDCLEISALENKEAAVSRSDSSFPDDGFVHNVPHLCTEQSSEEQVNSHIEPEERWESSPHSPGFDVLVHDELENMGYEEDSEYLPVLDRDEQELNDQYFGYEFKDPVECDTMCPEADILYEQETYDGYRCLDRDLTHANGRTVHAYSRDVFLDSILSRKRIRTSAEMAAYDKNLDLRDHLRRRREINGPPVTGFLRRQESSPLMVRNQERHQRHGIEQRPSRRLTSQLGYSAIDSIGEVETLSIANKHRLFRHSQQHRPRKHYREKLPKRQFLSSKISRKPVFKQRGFIHESSTFSGPKTLAEIKEEKKKKAEGSLHWKSTSTDFQDPKPLSEILKDKRTMDQ 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01084 523 Gene3D - 4 63 - -
Pumo4g01084 523 Gene3D - 74 140 - -
Pumo4g01084 523 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Pumo4g01084 523 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 523 - -
Pumo4g01084 523 MobiDBLite consensus disorder prediction 124 152 - -
Pumo4g01084 523 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Pumo4g01084 523 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Pumo4g01084 523 MobiDBLite consensus disorder prediction 124 160 - -
Pumo4g01084 523 MobiDBLite consensus disorder prediction 474 523 - -
Pumo4g01084 523 Pfam Zinc-finger containing family 7 63 IPR041686 -
Pumo4g01084 523 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 109 IPR000571 GO:0046872
Pumo4g01084 523 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Pumo4g01084 523 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Pumo4g01084 523 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Pumo4g01084 523 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Pumo4g01084 523 SMART c3hfinal6 6 34 IPR000571 GO:0046872
Pumo4g01084 523 MobiDBLite consensus disorder prediction 481 497 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo4g01084 zf-CCCH_3 4.5e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01084 - - gmx:100792282 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01084 4 13944169 13947790 Pumo4g01084 4 13944169 13947790 ECH