Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01078 ATGCCATGGTCTTATGCCTCGCCCTATGTCCCTCCACAAAACCGCACTAACACCACTCAACCTTTCTCCGATGATTCCTCCAGCCGTGGTGGTTCCGGTGCTCGGCGGTTCCCTCGCCCACACGATCCTTCTAACCGGTTCCCCGTGGAGGAAGCACAGAACGGCGACGCTATTAACTTCGACGCGTACGAGTCGGTCCCGGTGGAGGCGAGTGGGAAGGACGTGCCTCCGCCGGTGAACGCCTTCAACGAAACTGACTTGGACGAAGGGTTGAAGAGAAACATCGAGCGATGCAAGTACGTGAAACCCACGCCGGTTCAGCGTCACGCGATTCCCATTGCGTGTGCGGGACGCGACCTTATGGCCTGTGCCCAGACCGGGTCGGGTAAAACGGCTGCGTTTTGTTTTCCCATTATATCTGGGATTTTGAAGGGTCGTTCTCGTTCTGGGTTTTCATCAATGCCTCGTCGTGGTGCCGTTGTTGCATACCCCACTGCGCTTATTTTGTCTCCTACGAGGGAATTGTCATGCCAGATTCGTGATGAAGCGAATAAATTCGCATTTCAAACTGGAGTAAAGGTTGTGGTTGCCTATGGTGGGGCTCCTATTACTCAGCAGCTGCGCCTTTTGGAGAGAGGTGTTGACATATTGGTTGCAACTCCTGGGCGTTTGGTGGATATAATTGAGAGAGAAAGGGTTTCGTTGTCAAAGATAAAGTATCTTGCTTTGGATGAGGCTGATCGTATGTTGGACATGGGGTTTGAGCATCAAATACGCAAGATTGTGGAGCAAATGCACATGCCCCCACCAGGTATTAGACAGACGTTGCTGTTTAGTGCCACGTTTCCTAATGATATACAGAAGCTAGCATCGGACTTTTTGTCCGACTACATATTCCTATCTGTTGGAAGGGTTGGATCGAGTACTGAATTGATTGTGCAGAAGATTGAGCTTGTACAGGATATGGACAAAAGGGACCATCTCGTAGAGCATTTACGACGTCAAATGGTGCATGGGGCCAATGGGAAGCATGCTTTGACTCTTGTATTTGTTGAAACTAAGAGAGGAGCGGATGCTTTGGAAAGCTGGTTGTCAAGAAGTGGCTTTCCAGCTATTGCTATACATGGTGACAAAGTTCAAGTGGAAAGGGAACGGGCTTTAAGATCTTTCAAGTCTGGTTTGACTCCAATTTTGGTTGCAACTGATGTTGCTTCACGGGGACTGGATATCCCGCATGTGGCTCATGTTATAAACTTTGACTTGCCTAGAGACATAGATGACTACGTACATAGAATTGGAAGAACAGGCCGTGCAGGCAAATCTGGTTTAGCCACTGCTTTCTTCAGCGACAAGAACAGCCCTATTGCAAAGGCACTTGTTGCACTCTTGCAGGAAGCAAACCAAGAAGTTCCCTCTTGGCTCAACCAATATGCTGCTGATTGTTTACCATCTGGTGGGCGTGGTCGTGGATATGGAGCTCAGCGTTACAGCAGTGGTAGTTATGGTGGTCATGATTTCCGAAATGTCACTGAACATGAGGTGGTGCAGAATTACAACTGCTACAGTACTTGTGGCAATGCAGATCATGCTGTAGAGTCTTGCACTGATGATACCTCTTATGACATGCAAAACTCCAATATAGTCTCCTCTTTTGACAGTTTGAATATAGCTTCTGCGGGCAGTTATAATCACACTGATTCTGGTGATTTGTATGGTGGTAGGGTTGAAGAAGACGGGCCACGTGGCTATGGATATATTGTTGCCACTGGATGGGACTAG 1779 0.4834 MPWSYASPYVPPQNRTNTTQPFSDDSSSRGGSGARRFPRPHDPSNRFPVEEAQNGDAINFDAYESVPVEASGKDVPPPVNAFNETDLDEGLKRNIERCKYVKPTPVQRHAIPIACAGRDLMACAQTGSGKTAAFCFPIISGILKGRSRSGFSSMPRRGAVVAYPTALILSPTRELSCQIRDEANKFAFQTGVKVVVAYGGAPITQQLRLLERGVDILVATPGRLVDIIERERVSLSKIKYLALDEADRMLDMGFEHQIRKIVEQMHMPPPGIRQTLLFSATFPNDIQKLASDFLSDYIFLSVGRVGSSTELIVQKIELVQDMDKRDHLVEHLRRQMVHGANGKHALTLVFVETKRGADALESWLSRSGFPAIAIHGDKVQVERERALRSFKSGLTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSDKNSPIAKALVALLQEANQEVPSWLNQYAADCLPSGGRGRGYGAQRYSSGSYGGHDFRNVTEHEVVQNYNCYSTCGNADHAVESCTDDTSYDMQNSNIVSSFDSLNIASAGSYNHTDSGDLYGGRVEEDGPRGYGYIVATGWD 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01078 592 Pfam DEAD/DEAH box helicase 104 289 IPR011545 GO:0003676|GO:0005524
Pumo4g01078 592 MobiDBLite consensus disorder prediction 9 30 - -
Pumo4g01078 592 MobiDBLite consensus disorder prediction 1 54 - -
Pumo4g01078 592 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 57 478 - -
Pumo4g01078 592 Gene3D - 303 481 IPR027417 -
Pumo4g01078 592 Pfam Helicase conserved C-terminal domain 330 439 IPR001650 -
Pumo4g01078 592 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
Pumo4g01078 592 FunFam ATP-dependent RNA helicase RhlB 303 481 - -
Pumo4g01078 592 CDD SF2_C_DEAD 312 448 - -
Pumo4g01078 592 FunFam Probable ATP-dependent RNA helicase DDX4 44 302 - -
Pumo4g01078 592 SMART ultradead3 99 315 IPR014001 -
Pumo4g01078 592 CDD DEADc_DDX3_DDX4 82 306 IPR044763 GO:0003724|GO:0005524
Pumo4g01078 592 Gene3D - 40 302 IPR027417 -
Pumo4g01078 592 SMART helicmild6 358 439 IPR001650 -
Pumo4g01078 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 454 IPR027417 -
Pumo4g01078 592 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 478 IPR001650 -
Pumo4g01078 592 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 300 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01078 Pumo-Chr4 13882248 13885277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01078 78 471 Eukaryotic Initiation Factors Gene Family AT3G19760 31.646 1.03e-58 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01078 K11594 - gmx:100791226 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01078 4 13882248 13885277 Pumo4g01078 4 13882248 13885277 ECH