Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01065 ATGTATGAATTGAAGTGGCTCCATCTTATAATGGCAGTTAGCCGACAGTGTGCCTTCTTTAGGTTGAAAACTCACTTCCCTCCCCCCTCTTTTTCTCCCTCTATATCTATTGGTACTCTGTTCCTTCTGTACTTGGCCATCACTGTTTGTGAGTCCAAAATATCTCTTGCACCATCCCTGAACCCCAACAACATCATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGTTCATGGGTATCTGAAATTCGCCACCCTCTTCTGAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCAGAAGAAGCTGCTAGAGCCTATGATCAAGCTGCGATTCTGATGAGTGGGAGAAATGCCAAAACCAATTTCCCAATAACCCAAACTCCAGAAGGTGATCCAAAGAGCACTACCAGTGAGGACACTCCCTCCACCTCCAAGGATCTTGAAGAAATCCTGCATGCAAAGCTTCGAAAATGTGGCAAGGTACCTTCACCTTCTATGACCTGTTTGAGGCTTGACACAGAGAACTCCCACATCGGAGTGTGGCAAAAGCGTGCTGGGAGGCGTTCTGATTCAAATTGGGTCATGACGGTTCAGCTTGGAAACAAGAGTGCCAATAATAATAATAATGAGAGTACTCTTCAAGCTGATAGTAGCAGTAGTAGTTCTCTTTCTTCTCTACCTTCTTCTTCTTCTTCTGATCATCAACACCATGAGTCTCCATCAATGGCTGTGCCAGGTCATCATCATCAAGAAGTGCTGAGAGGAGAGATTGATGAAGAGGAGAGAATTGCCCTTCAGATGATAGAGGAACTCCTCAACGACAGAAACTGCCCTAGCCCATCATTTAACAACATTCAAGAAAGGGATGGTGCTGATCATGACAACTTTTTTCTTTAA 912 0.4507 MYELKWLHLIMAVSRQCAFFRLKTHFPPPSFSPSISIGTLFLLYLAITVCESKISLAPSLNPNNIMVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSTTSEDTPSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGNKSANNNNNESTLQADSSSSSSLSSLPSSSSSDHQHHESPSMAVPGHHHQEVLRGEIDEEERIALQMIEELLNDRNCPSPSFNNIQERDGADHDNFFL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01065 303 MobiDBLite consensus disorder prediction 279 303 - -
Pumo4g01065 303 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Pumo4g01065 303 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Pumo4g01065 303 FunFam Ethylene-responsive transcription factor 2 70 129 - -
Pumo4g01065 303 Pfam AP2 domain 71 119 IPR001471 GO:0003700|GO:0006355
Pumo4g01065 303 SUPERFAMILY DNA-binding domain 71 129 IPR016177 GO:0003677
Pumo4g01065 303 MobiDBLite consensus disorder prediction 125 146 - -
Pumo4g01065 303 MobiDBLite consensus disorder prediction 206 253 - -
Pumo4g01065 303 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Pumo4g01065 303 MobiDBLite consensus disorder prediction 206 243 - -
Pumo4g01065 303 Gene3D AP2/ERF domain 70 130 IPR036955 GO:0003700|GO:0006355
Pumo4g01065 303 MobiDBLite consensus disorder prediction 125 149 - -
Pumo4g01065 303 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 67 234 - -
Pumo4g01065 303 CDD AP2 70 130 IPR001471 GO:0003700|GO:0006355
Pumo4g01065 303 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01065 Pumo-Chr4 13668342 13669944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01065 66 278 AP2-EREBP Transcription Factor Family AT1G15360 58.371 1.78e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g01065 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01065 - - gsj:114375848 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01065 4 13668342 13669944 Pumo10g00074 10 1412911 1414997 ECH
Pumo4g01065 4 13668342 13669944 Pumo4g01065 4 13668342 13669944 ECH