Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01056 ATGAAGTATTCGGGGCGGAGCGCCTCTCTACTTCCCGAGAGTGAAGCTATTATTACCCATACACGAAAACGAAAAACCCTTCGCTGCCTTCTGCACCTCACAACTCACTACTTCCTCCGCATTCTTTCTTGTCATCTTTACCATCCCCACACCCTAGGAACTTCCAATCCAATCGAAGCAACAACAACAACAACACGTTTGTTTTCTCTGGACGTTCTTCATCAACATTTAATGGTTTCTACCAGGGCGGAGAAGAGTCCGGAATCCAAAATGGCCGTGGCCAATGGCGGAAAAGGAGCTAAGCCTGAGAACAAATCGAAGGGTTCGACAATGCCGCAGAGGTCCAGTGCTCGGATTCAAGCGCTGCAAAAAGCTGAGGAGGAGCTTCTTGCTCGTCAAAAAGCGGAGGTAGTGGTTGAGGAGAAACACAATTCCAACGATGAGGTGACGGCGGTAAAGGCAAAAAAGCGCAATAGAAACAGTGGCGGTTGCAGTGAGGAGAGTGTAGCAGTGGAAGAAGAGGTTGTTTCGCCGTGGAAGAAAAAGTGCAAGGGTAAGGTGGAGGAAGAAGTGAATGGGAAGGAGGAATCGGAAAATGCGGGTGGGGGTTTGAGGGAGAAGGGTGACTTTCTTAAGGTCAAAAAGACGATAAGACTGTTTAATAAGCATTACCTTCAATTAATTCAGGAAGAAGAAAAGAGGTGTGCCGCTGAGCCTAAAGCTGCTCAGCAAAAGGGTTCTAAAAAGGCGAAGAAGGAGAAAGGTGCTACACCTGAAAAATCAAAGGCCACTTCTAAACGACCAGATCTAAAGGCCACGACGAAGATGAGGGATAACAATGAGATATTGTACCCTGAGAAAAGAATTGGCAACATTCCAGGTATTGAGGTTGGATATCAGTTCTATTCTCGTTGTGAAATGGTTGCAGTTGGTTTTCACAGTCACTGGTTAAACGGCATTGATTATATGGGCGAGTCCTATGCCAAAGCGTACACCTACGAATTTCCAGTAGCTGTAGCCATTGTTTTGTCGGGCATGTACGAGGATGATCTCGACAATGCTGAGGATGTTGTGTACACTGGTCAAGGTGGCCATAATCTGACTGGTAATAAGCGTCAAATCGGGGATCAAAAGTTGAAGAAAGGTAACCTGGCTCTCAAGAATTGTGTTGAGCAATGTCTGCCTGTTAGAGTCATTCGTGGTCATAAATGTTCTATCAGTTACACTGGTAAAGTGTACACATATGATGGCTTGTACAAGGTTGTCGATTATTGGGCAGAGAAGGGGATATCTGGATTTACAGTCTACAAGTTTACACTTAGGAGGCTTGGAGGGCAACCTAAATTAACCACAAATCAGGTGTATTTCACCAATGAACGCGTACCTCGATCTCTAAAAGAGATACGAGGATTGGTTTGTGAGGATATCACTGGAGGTCAAGAAGATATTCCAATTCCAGCTACAAATTTGGTTGATGACCCCCCTGTTCCACCCACAGGTTTCACGTATTGCAAGTCTCTTAAGCTTGCAAAAAATGTGAAGCTTCCCATCAATGCCGCCACCGGATGCAAATGCAAAGGCATTTGTAATGACCCAACAACCTGTGCATGTGCATTGCTTAATGGCTCTGATTTGCCTTATGTGTCTCAAGGTGGTGGAAGGTTAGTCGAAGCCAAAGATGTAGTCTTTGAATGTGGTCCCAAGTGTGGTTGTGGTCCAGATTGTGTGAACAGAACTTCTCAAAAGGGACTTAGATATCGTCTGGAGGTTTTTCGCACTGCAAACAAAGGATGGGCTGTTAGATCATGGGATTTTATACCTTCTGGAGCACCAGTTTGTGAGTACACAGGAATACTTACTAGGACTGAAGATATGGATAGTGTGTTAGAAAACAACTTTATTTTTGAGATAGATTGTTTGCAAACAATAAAGGGCCTTGGGGGAAGAGAGAGGCGCTCTCAAGAAGGAGAGATTCCTGCAAATCTCTTGGACAAATATGATGATCAAAGTTCTGAAAGTGCGCCCGAGTTTTGTATTGATGCAGGATCTACTGGAAATGTTGCTAGGTTTATAAACCATTGCTGTGAGCCTAATCTGTTTGTTCAATGTGTTTTGAGCACACACCATGATTTGAGATTGGCTCGTGTAGTGCTGTTTGCTGCCGACAACATACCCCCTTTGCAGGCAACTCATTTTCTATATTTTTCCCCCAATTTATCTGTGGAATTAACGTATGACTATGGTTATGCGCTTGATAGCGTCTTGGACTCTGATGGGAAGATCAAGCAAATGCCATGCTATTGTGGAGCCTCAGACTGCAGGAAGCGATTATTCTAA 2337 0.4442 MKYSGRSASLLPESEAIITHTRKRKTLRCLLHLTTHYFLRILSCHLYHPHTLGTSNPIEATTTTTRLFSLDVLHQHLMVSTRAEKSPESKMAVANGGKGAKPENKSKGSTMPQRSSARIQALQKAEEELLARQKAEVVVEEKHNSNDEVTAVKAKKRNRNSGGCSEESVAVEEEVVSPWKKKCKGKVEEEVNGKEESENAGGGLREKGDFLKVKKTIRLFNKHYLQLIQEEEKRCAAEPKAAQQKGSKKAKKEKGATPEKSKATSKRPDLKATTKMRDNNEILYPEKRIGNIPGIEVGYQFYSRCEMVAVGFHSHWLNGIDYMGESYAKAYTYEFPVAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGNKRQIGDQKLKKGNLALKNCVEQCLPVRVIRGHKCSISYTGKVYTYDGLYKVVDYWAEKGISGFTVYKFTLRRLGGQPKLTTNQVYFTNERVPRSLKEIRGLVCEDITGGQEDIPIPATNLVDDPPVPPTGFTYCKSLKLAKNVKLPINAATGCKCKGICNDPTTCACALLNGSDLPYVSQGGGRLVEAKDVVFECGPKCGCGPDCVNRTSQKGLRYRLEVFRTANKGWAVRSWDFIPSGAPVCEYTGILTRTEDMDSVLENNFIFEIDCLQTIKGLGGRERRSQEGEIPANLLDKYDDQSSESAPEFCIDAGSTGNVARFINHCCEPNLFVQCVLSTHHDLRLARVVLFAADNIPPLQATHFLYFSPNLSVELTYDYGYALDSVLDSDGKIKQMPCYCGASDCRKRLF 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01056 778 SMART set_7 586 754 IPR001214 GO:0005515
Pumo4g01056 778 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 102 778 IPR025794 GO:0016571
Pumo4g01056 778 Gene3D SET domain 466 778 IPR046341 -
Pumo4g01056 778 SMART preset_2 473 570 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo4g01056 778 SMART PostSET_3 762 778 IPR003616 -
Pumo4g01056 778 MobiDBLite consensus disorder prediction 238 277 - -
Pumo4g01056 778 SUPERFAMILY PUA domain-like 272 461 IPR015947 -
Pumo4g01056 778 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 94 772 - -
Pumo4g01056 778 ProSiteProfiles Pre-SET domain profile. 521 583 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo4g01056 778 ProSiteProfiles Post-SET domain profile. 762 778 IPR003616 -
Pumo4g01056 778 SMART G9a_1 285 446 IPR003105 -
Pumo4g01056 778 Gene3D - 272 462 IPR036987 -
Pumo4g01056 778 Pfam SAD/SRA domain 289 446 IPR003105 -
Pumo4g01056 778 Pfam SET domain 597 727 IPR001214 GO:0005515
Pumo4g01056 778 SUPERFAMILY SET domain 470 754 IPR046341 -
Pumo4g01056 778 MobiDBLite consensus disorder prediction 81 116 - -
Pumo4g01056 778 ProSiteProfiles SET domain profile. 586 735 IPR001214 GO:0005515
Pumo4g01056 778 Pfam Pre-SET motif 477 578 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo4g01056 778 ProSiteProfiles YDG domain profile. 290 442 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01056 Pumo-Chr4 13577861 13580229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01056 282 778 EF-hand Containing Proteins AT5G13960 65.469 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo4g01056 SAD_SRA 2.7e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01056 K11420 - gmx:100795584 1112.83