Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01053 ATGTCGAGCTGCAGCATCGATGTTGTGCCTGAGCAACTCTGCTACATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCCTGTTTGACATTGTGACCGTTCGATGTGGGCACTGCACCAATCTATGGTCCGTGAACATGGCGGCTGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCTGGGCACTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCCAAATGCAACAATAGGATTGCAATGCGTGCGCCCACCACTCATGTAACTGAGGAAAGGGTTGTGAATCGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCAAAGAACTGGGCACATTTTCCCCATATTCATTTCGGGCTGATGTTGGAGAGCAACAACCAAGCTAAGATGGAGAATGTTTCTGAGAAGCATTTAATGTCAAGGGCTGCGCTATTGAATAAATGA 561 0.4759 MSSCSIDVVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGHCNPEYRIDTGSTSKCNNRIAMRAPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMENVSEKHLMSRAALLNK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01053 186 CDD HMG-box_SF 113 149 - -
Pumo4g01053 186 SUPERFAMILY HMG-box 103 152 IPR036910 -
Pumo4g01053 186 Pfam YABBY protein 10 159 IPR006780 GO:0007275
Pumo4g01053 186 FunFam axial regulator YABBY 5-like 97 155 - -
Pumo4g01053 186 Gene3D High mobility group box domain 98 176 IPR036910 -
Pumo4g01053 186 PANTHER PROTEIN YABBY 6-RELATED 1 169 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01053 Pumo-Chr4 13523915 13528050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01053 11 169 C2C2-YABBY Transcription Factor Family AT2G26580 78.616 2.13e-91 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pumo4g01053 YABBY 3.2e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01053 K25796 - gmx:100804731 384.415