Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01040 ATGGAGCTTCAACTGGGTCTCGCTCTCCCAACCAATCCCTCCAAACTTGTCCACCTCAATTCTCGTGCTTTCCACAAAAAACGTACCTTCTCCCAACTCTTGGACCATGCACCAGAAACTACCCACACGGACCACGTTATGCTTCCTACTCTGTCTCTCCTCCCTTTAACCCCAAACCACGATGATGATTATGAAGATGATCACCACAGCCAATGCTCTAACATCACCAAGGATGAGGAGGAGGGTGTAGTGGGTTGGCCACCCGTGAACTACTGGAGGAAGAAACTTCGTGTGGACGAGGTTGTCGGGAATAATGATCACGTGGTATGGGTTGATCATCGTCATGGCCATGGCTCTGCTGGCATCGGAGGATCATCATCGAATACTCTGTACGTGAAGGTGAAGATGGAGGGTGTGGGAATTGCACGCAAGGTTGATCTCGCCATGCACCAATCGTTTCACACGCTCAAGGAAACCTTGATGGACATGTTTGGAAAATGTCATCAACAATCAAACAGCTATGAACTGGCTTATCAGGACAAAGAAGGTGACTGGCTTCTCGCACAGGATGTACCATGGAGAAGTTTCGTTGGGTGTGCACGACGACTCAAATTGGTGAAGAGCAGCAGATAA 633 0.4897 MELQLGLALPTNPSKLVHLNSRAFHKKRTFSQLLDHAPETTHTDHVMLPTLSLLPLTPNHDDDYEDDHHSQCSNITKDEEEGVVGWPPVNYWRKKLRVDEVVGNNDHVVWVDHRHGHGSAGIGGSSSNTLYVKVKMEGVGIARKVDLAMHQSFHTLKETLMDMFGKCHQQSNSYELAYQDKEGDWLLAQDVPWRSFVGCARRLKLVKSSR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01040 210 Pfam AUX/IAA family 171 209 IPR033389 -
Pumo4g01040 210 Pfam AUX/IAA family 25 168 IPR033389 -
Pumo4g01040 210 SUPERFAMILY CAD & PB1 domains 125 205 - -
Pumo4g01040 210 Gene3D - 124 210 - -
Pumo4g01040 210 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 209 IPR003311 GO:0005634|GO:0006355
Pumo4g01040 210 ProSiteProfiles PB1 domain profile. 129 210 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01040 Pumo-Chr4 13279710 13281172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01040 131 206 B3 DNA Binding Superfamily AT1G19850 36.250 2.57e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo4g01040 AUX_IAA 1.5e-19 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01040 4 13279710 13281172 Pumo4g01040 4 13279710 13281172 ECH