Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01038 ATGAACATGAAAGTTGTGAGCATGGAGAGCGAGAAGAAGTGCGGTTGCTGGGCTGTCCTTAAACGCGGCGTTAGAGGTGCGTGCAAACCTTCAGCTTCCAGAGACTCTCCTAACACTATCCCTCGTACTAGTCTCGTTTATGATGCAGCAACCGAGACAAGATACCTGAATGCTAGCAATAGAGAACTATGTCCTCCGAATGAAGCGCGATTGTCTTCTGATAATCCTGATCCCCCACCTCAGGAGAATAAGGCTCCTTGCCAGCTCCTTCAATTTACATTTCAAGAACTAAAGGCTGCCACTGGAAATTTCAGACCCGATAGCATTCTTGGGGAGGGTGGCTTTGGTTATGTTTTCAAAGGATGGATTGAGGAAGATGGAACGGCACCAGCGAAACCCGGTTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGTCTTCAGGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATCGGTTACTGCATTGAAGATGATCAACGGCTTCTTGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATTTATTCAGAAGAACCGTACCTCTTCCGTGGTCCAACAGGATTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAATGGTCCTGAACCAGTCATTTATAGAGATTTTAAAACATCTAACATTTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGAGTAGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGGACACTTGACAGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTACTTGAGATATTAACAGGAAGAAGATCAATGGACAAGAAGCGCCCGAGTGGGGAACAAAATCTTGTTTCTTGGGCTAGGCCATATCTAGCTGACAAGCGAAAACTGTACCAACTCGTGGATCCTCGCCTCGAACTAAATTATTCTCTAAAAGGAGTGCAGAAGATTTCCCAGTTAGCTTATAATTGCCTCAGTAGAGACCCCAAATCCCGTCCTAACATGGATGAAGTTGTGAAGGCTCTGACTCCATTGCAGGATCTTAATGACCTTGCAATTTTGTCGTATCACTCTCGCTTGTCTCAACAAGGGAGACGGAAGAAGAAAGATGGAACTCCACATATCACATACACGCAATCCAAGAGCATCAGGGCTTCTCCCTTGAATACCGGCAAGCAGCATCGATGA 1311 0.4493 MNMKVVSMESEKKCGCWAVLKRGVRGACKPSASRDSPNTIPRTSLVYDAATETRYLNASNRELCPPNEARLSSDNPDPPPQENKAPCQLLQFTFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRIKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYNCLSRDPKSRPNMDEVVKALTPLQDLNDLAILSYHSRLSQQGRRKKKDGTPHITYTQSKSIRASPLNTGKQHR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01038 436 Gene3D Transferase(Phosphotransferase) domain 1 190 400 - -
Pumo4g01038 436 SUPERFAMILY Protein kinase-like (PK-like) 86 389 IPR011009 -
Pumo4g01038 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Pumo4g01038 436 PANTHER OS01G0588500 PROTEIN-RELATED 85 387 - -
Pumo4g01038 436 ProSiteProfiles Protein kinase domain profile. 104 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01038 436 MobiDBLite consensus disorder prediction 416 436 - -
Pumo4g01038 436 MobiDBLite consensus disorder prediction 401 436 - -
Pumo4g01038 436 CDD STKc_IRAK 110 386 - -
Pumo4g01038 436 ProSitePatterns Protein kinases ATP-binding region signature. 110 142 IPR017441 GO:0005524
Pumo4g01038 436 MobiDBLite consensus disorder prediction 61 85 - -
Pumo4g01038 436 Pfam Protein tyrosine and serine/threonine kinase 108 383 IPR001245 GO:0004672|GO:0006468
Pumo4g01038 436 FunFam Probable serine/threonine-protein kinase PBL8 190 403 - -
Pumo4g01038 436 Gene3D Phosphorylase Kinase; domain 1 80 189 - -
Pumo4g01038 436 FunFam Serine/threonine-protein kinase BIK1 72 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01038 Pumo-Chr4 13216747 13221009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01038 92 383 Glycoside Hydrolase AT3G07070 56.081 1.27e-110 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo4g01038 PK_Tyr_Ser-Thr 3.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01038 - - aprc:113848012 867.84