Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01013 ATGACCTCGAACCTCTCAACCAATGGAGACTCCGAAACTCTCCTTCGTCGTCCTCTGTTGTCCTCCCAAAGATCCATTGTCAACTCCACGTCCCAGGTTGCTATTGTCGGCTCCAATGTCAGCCCAATTGAGAGCCTCGACTACGAGATTTTCGAGAACGAGTTCTTCAAGCAGGATTGGAGGACCAGAGGGAAGGCTCAGATATTTCAGTTCGTGGTTATGAAGTGGCTCTTGTGCTTTCTGATTGGCTTGATCGTTTGCCTCGTTGGCTTTTGCAACAATCTCGCGGTTGAGAATCTCGCTGGCATCAAGTTTGTGGTCACGTCCAACATGATGTTGGAGAGGAGGTTTCTGATGGCCTTTTTAGTATTTTTTGTTTCAAATTTGGTTCTCACGCTTTTTGCGTGCACAATCACGGCTTTGATAGCACCTAGTGCCACCGGTTCAGGTATACCCGAGGTGAAAGCTTACCTGAATGGTGTGGATGCACCTGGAATATTTACTGTACGAACACTGCTTGTTAAGATTATTGGAAGCATTACAGCAGTGTCATCATCGCTTCTTATTGGGAAGGCGGGGCCTATGGTGCATACAGGTGCATGTGTGGCAGCATTGTTAGGTCAGGGTGGGTCGAAGAGATATGGGTTAAGATGGAAATGGTTACAGTTTTTTAAGAATGACCGAGATCGTAGAGATCTAATAATATGTGGATCAGCGGCTGGAATTGCTGCTGCCTTCCGTGCCCCTGTTGGTGGTGTGTTGTTTGCTCTTGAAGGGATGGCGTCTTGGTGGAGGAGTGCCCTTCTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATTTTGCTTCGTGCCATGATTGATTTATGTTTAAGTGGTAAATGTGGGTTATTTGGTAAAGGGGGACTGATAATGTTCGATGCTTATTCAGCAAGTATTTCATATCATTTGGTGGATGTTCCCCCTGTGTTTGTTCTTGGTGTTATAGGGGGGATACTTGGCAGCTTATTTAATTTGATTTTGAGCAAAGTTCTTCGCATATACAATTTTATCAATGAGAAAGGCACCATTTTCAAAATTTTGCTTGCCTGTGTAATCTCCATTTTTACATCCTGTCTTCTTTTTGGATTGCCATGGTTGACATCTTGCCGACCTTGTCCACCTGATCCAACTGAGCCTTGTCCTACGATAGGTCGGTCTGGTATCTACAAGAAATTCCAGTGCCCACCTAATCACTACAATGATCTTGCTAGCCTCATTTTCAACACAAACGATGACGCTATTAGAAATCTATTTAGCAAGAATACCGACGATGAGTTTGAGTTTAAATCAGTGTTCATCTTTTTCATCACATGCTTTTCTTTAAGTATCTTTAGCTATGGAGTTGTTGCTCCCGCTGGTCTTTTTGTGCCAGTTATTGTGACTGGTGCATCTTATGGGCGCATTGTTGGAATGTTTTTTGGCAAAAGGTCCAATCTTAACCATGGTCTTTATGCTGTACTTGGTGCTGCTTCCTTTCTTGGTGGCTCCATGAGGACAACGGTTTCTCTTTGTGTAATTATTCTAGAACTGACCAATAACCTGTTATTGCTACCCCTAATCATGATGGTGCTGTTCATATCTAAGACTGTAGCAGATGCTTTCAATGCAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCTTATTTAGAAACTCACGCTGAACCATATATGAGGCAGCTAACAGTAAGCGATGTAGTCACAGGCCCACTTCAGACGTTTAATGGTGTTGAGAAGGTTCGCAACATAGTGTTTATTCTCAGAACTACAGGACATAACGGGTTTCCTGTTATAGATGAGCCTCCTATTTCAGAAGCTCCAGTTTTATTTGGCATAATCCTTCGTGACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTATGACCTCACCTATGGCAACAAGTGGTGATGTCTTCAATGAGTTTTCAGCAGATGATTTTGCAAAGAAGGGTTCAAGCAAAGGTCGTCTAAAGATAGAGGATATACAGTTATCAGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATGCTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTTCGAGAGCTTGGTTTAAGGCATCTGCTAGTGGTACCCAAGATCACCAGTAGATCACCTGTGGTGGGTATACTCACAAGGCACGATTTCATGCCAGAACATATATTGGGTTTGCATCCCTTTCTGGTAAGAAACACGGGGAAAAGTTTAAGATTGTAG 2298 0.4286 MTSNLSTNGDSETLLRRPLLSSQRSIVNSTSQVAIVGSNVSPIESLDYEIFENEFFKQDWRTRGKAQIFQFVVMKWLLCFLIGLIVCLVGFCNNLAVENLAGIKFVVTSNMMLERRFLMAFLVFFVSNLVLTLFACTITALIAPSATGSGIPEVKAYLNGVDAPGIFTVRTLLVKIIGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGSKRYGLRWKWLQFFKNDRDRRDLIICGSAAGIAAAFRAPVGGVLFALEGMASWWRSALLWRAFFTAAIVAILLRAMIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDVPPVFVLGVIGGILGSLFNLILSKVLRIYNFINEKGTIFKILLACVISIFTSCLLFGLPWLTSCRPCPPDPTEPCPTIGRSGIYKKFQCPPNHYNDLASLIFNTNDDAIRNLFSKNTDDEFEFKSVFIFFITCFSLSIFSYGVVAPAGLFVPVIVTGASYGRIVGMFFGKRSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNANIYDIIMKAKGLPYLETHAEPYMRQLTVSDVVTGPLQTFNGVEKVRNIVFILRTTGHNGFPVIDEPPISEAPVLFGIILRDHLLTLLKKKAFMTSPMATSGDVFNEFSADDFAKKGSSKGRLKIEDIQLSEEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFRELGLRHLLVVPKITSRSPVVGILTRHDFMPEHILGLHPFLVRNTGKSLRL 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01013 765 PRINTS Plant CLC chloride channel signature 416 432 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo4g01013 765 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo4g01013 765 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo4g01013 765 PRINTS Plant CLC chloride channel signature 49 57 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo4g01013 765 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo4g01013 765 Pfam Voltage gated chloride channel 132 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g01013 765 CDD CBS_pair_voltage-gated_CLC_euk_bac 577 746 - -
Pumo4g01013 765 ProSiteProfiles CBS domain profile. 693 754 IPR000644 -
Pumo4g01013 765 SMART cbs_1 697 748 IPR000644 -
Pumo4g01013 765 SMART cbs_1 585 638 IPR000644 -
Pumo4g01013 765 PRINTS Chloride channel signature 496 512 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g01013 765 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g01013 765 PRINTS Chloride channel signature 464 484 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g01013 765 PRINTS Chloride channel signature 552 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g01013 765 PRINTS Chloride channel signature 514 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g01013 765 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g01013 765 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g01013 765 Gene3D Clc chloride channel 67 565 - -
Pumo4g01013 765 Pfam CBS domain 697 743 IPR000644 -
Pumo4g01013 765 SUPERFAMILY CBS-domain pair 568 744 IPR046342 -
Pumo4g01013 765 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 23 750 - -
Pumo4g01013 765 SUPERFAMILY Clc chloride channel 53 567 IPR014743 -
Pumo4g01013 765 FunFam Chloride channel ClC3 67 383 - -
Pumo4g01013 765 Gene3D - 566 745 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01013 Pumo-Chr4 12928487 12934722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01013 8 765 Ion Channels AT5G33280 74.142 0.0 1132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01013 K05016 - gmx:100817901 1394.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01013 4 12928487 12934722 Pumo4g01013 4 12928487 12934722 ECH