Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00986 ATGGGAAAGAAAAAGAAGCAAGTAGGAGAAATAAGGGAGGATGGTAAAGTGGGAGATAGCAGCCCCGGAGCATATGATAATGATACTATGGTGTTTATATCCATGTCTCAAGAATTGAAGAATGAGGGGAACAAGCTGTTCCAAAAGAGGGATCTTGAAGGAGCTATACTCAAATATGAGAAAGCCCTCAAGTTGCTTCCGAAAAATCATATTGATGTCTCCTATCTGCGGAGCAACATGGCTGCATGTTACATGCAGATGGGACTCAGTGAGTTCCCAAGGGCAATTCATGAATGCGATTTGGCTCTTCAAGTGACACCGAAATATAGTAAAGCACTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTAGCTCTGAGAGATGTCAGTACTGTTGTGAAGATGGAGCCAAATAATGTCATGGCATTGGAGATCTCAGAAAAGGTGAAAAATGCACTTGAGGAGAAAGGATTGAGAGTAAATGATACAATAATTGAGTTGCCTCCAGATTATGTTGAACCTCCTTATGCTTTGCCTCCAGAAAAGGTATTGAAAGAGAAGACACGCAAGAAGAAGGGCAATAAAGAGGAAGAGAAGGCTCCTGATGACAAAGTTCTAGAAAAGCAAACCGAGGAGAAATTTGAGAAGAAGGCTGAGGGCATTGTAGTCGTAGAGAAGAAGATCAACACGTCCAAGAAGAAGAAGCCCAAGGAAAAAATTGATGAGAAGAAGGCTGATATTAAGGAAGTTATAGAGGAAAGAAGTAATGGTAGAAGAGAACATGTTCCTAAGAAAACAGTTAAACTTATTTTTGGTGATGATATAAGATGCGCTGAACTGCCTATTAATTGTAGCCTCTTCCAGTTAAGAGAAGTTATTCTGGAACGATTCCCAAGCCTAGGAGCTGTTCTTGTCAAATACAGAGACCAAGAAGGTGATTTGGTCACAATCACTTCTGATGATGAATTAAGATGGGCTGAAACAGGATCTAATGGTTCTATCCGACTGTACATAGTAGAAGCTACTCCTGAGCAGGATCCACTTTTTGAGAAATTTAAAGTGAAGGAGGCAGAAGTGGTTGGCATTAACATTGCACCTGAGAATGGTTGTGTGGGAAAGGCAAAGGAAGTTGCTAGCTCTTCTTGCATTGAGGATTGGATAATTCAGTTTGCCAAACTGTTCAAGAACCATGTTGGGTTTGAATCTGACATATATTTGGATTTTCATGAACTTGGGATGAAGCTCTATTCTGAGGCTTTGGAGGAGACAGTTACAAGTGAAGAAGCACAAGGCCTATTTGACATTGCAGGAGATAAGTTCCAAGAGATGACTGCTCTTGCATTGTTCAACTGGGGAAATGTGCATATGTCTAGGGCAAGGAAGAAAGTATATTTCAAAGAAGATTCTTCTAAAGAGCATCTATGTGAACAAATCAAAAGTTCATATGAATGGGCACTGGAAGAATATGCAAAAGCAGGAGAAAAATATGAAGCAGCCATTAAAATTAAGTCAGATTTTCATGAAGGCTTCCTGGCTCTAGGGCTGCAGCAGTTTGAGCAAGCAAAACATTCTTGGTATCATGCACTCAGTAGTAATGTAGATTTACTGACATGGCCTTCCACTGAGGTTCTTCATCTTTACAACAATGCTGAAGAAAATATGGAGAAAGGAATGCAGATATGGGAAGAATCAGAAAAGCAGAACTTGAGTAAAACATCTAATGATGTTAGATTACATTTGCAGGACATGGGGTTGGATGGGCTTTGTAAAAATATATCCTTAGATGAACTTGTATCACAGGAGGCACATATGAGGTCTCAAATAAATCTCCTATGGGGTACCATGCTATATGAACGCTCAATTGTGGAATTCAAATTAGGGCTACCGATATGGCATGAATCTCTAGAAGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCCGTAATTTTGAAGAACCACTGTTCAAATAATACTTCTGTAGATGGTCTTGCCTTCAACATTGACGAAATAGTACAGGCATGGAATGAGATGTACAAAGCTAAAAAGTGGCAGAGTGGAGTTCCATCATTTCGTTTGGAACCCTTATTTAGAAGGTTATTCTTGCTACTTTTAAGAATTTGGGTTCAACAATATACTTCAAGAAATTATTCTTTTAATGGAGTTTACATTTCCAAGAACACAAGGGTCTACAGGTTCCTTTACACGTTGGGAAGATGGCCTAGCAGGAGTTACCTTTTACTTAGTTTCTGCCTTTCGCTCATTTTGCCTTCCCTTTAA 2307 0.3971 MGKKKKQVGEIREDGKVGDSSPGAYDNDTMVFISMSQELKNEGNKLFQKRDLEGAILKYEKALKLLPKNHIDVSYLRSNMAACYMQMGLSEFPRAIHECDLALQVTPKYSKALLKRARCYEALNRLDLALRDVSTVVKMEPNNVMALEISEKVKNALEEKGLRVNDTIIELPPDYVEPPYALPPEKVLKEKTRKKKGNKEEEKAPDDKVLEKQTEEKFEKKAEGIVVVEKKINTSKKKKPKEKIDEKKADIKEVIEERSNGRREHVPKKTVKLIFGDDIRCAELPINCSLFQLREVILERFPSLGAVLVKYRDQEGDLVTITSDDELRWAETGSNGSIRLYIVEATPEQDPLFEKFKVKEAEVVGINIAPENGCVGKAKEVASSSCIEDWIIQFAKLFKNHVGFESDIYLDFHELGMKLYSEALEETVTSEEAQGLFDIAGDKFQEMTALALFNWGNVHMSRARKKVYFKEDSSKEHLCEQIKSSYEWALEEYAKAGEKYEAAIKIKSDFHEGFLALGLQQFEQAKHSWYHALSSNVDLLTWPSTEVLHLYNNAEENMEKGMQIWEESEKQNLSKTSNDVRLHLQDMGLDGLCKNISLDELVSQEAHMRSQINLLWGTMLYERSIVEFKLGLPIWHESLEVAVEKFELAGASPTDIAVILKNHCSNNTSVDGLAFNIDEIVQAWNEMYKAKKWQSGVPSFRLEPLFRRLFLLLLRIWVQQYTSRNYSFNGVYISKNTRVYRFLYTLGRWPSRSYLLLSFCLSLILPSL 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00986 768 PANTHER PROTEIN CLMP1 4 708 IPR044517 -
Pumo4g00986 768 MobiDBLite consensus disorder prediction 184 209 - -
Pumo4g00986 768 Gene3D Tetratricopeptide repeat domain 34 166 IPR011990 GO:0005515
Pumo4g00986 768 SUPERFAMILY TPR-like 37 534 IPR011990 GO:0005515
Pumo4g00986 768 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Pumo4g00986 768 ProSiteProfiles PB1 domain profile. 268 345 IPR000270 GO:0005515
Pumo4g00986 768 MobiDBLite consensus disorder prediction 1 19 - -
Pumo4g00986 768 Gene3D - 268 348 - -
Pumo4g00986 768 SUPERFAMILY CAD & PB1 domains 268 354 - -
Pumo4g00986 768 SMART tpr_5 110 143 IPR019734 GO:0005515
Pumo4g00986 768 SMART tpr_5 36 69 IPR019734 GO:0005515
Pumo4g00986 768 SMART tpr_5 74 109 IPR019734 GO:0005515
Pumo4g00986 768 CDD PB1 270 342 - -
Pumo4g00986 768 Coils Coil 244 264 - -
Pumo4g00986 768 SMART PB1_new 268 345 IPR000270 GO:0005515
Pumo4g00986 768 MobiDBLite consensus disorder prediction 1 23 - -
Pumo4g00986 768 Pfam PB1 domain 270 343 IPR000270 GO:0005515
Pumo4g00986 768 MobiDBLite consensus disorder prediction 180 209 - -
Pumo4g00986 768 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00986 Pumo-Chr4 12678938 12683783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00986 24 143 Calmodulin-binding Proteins AT3G25230 29.851 6.33e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00986 K26538 - gmx:100807387 1217.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00986 4 12678938 12683783 Pumo4g00986 4 12678938 12683783 ECH