Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00973 ATGGGAAGTAGTAGTACTGAAAAGATCCCAATCAATAACAGCGCTGAAAGTTCAGAAACCACCATCGAGATAAAGATTAAAACATTGGATTCTCAAACTTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGTTATCTGAACGACAACGCTTAATTTGCCAAGGAAAAGTTCTGAAGGATGATCAGCTCCTGTCGGCCTATCATGTTGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGATCTACCACCACCAGGAAGTGTGCCCAATCATTCAGTGACTGAACTGAATTCAAGCACAACCCTTGGTCACAGTAGTCAAGTAGCCCCTGGTGTTTTTATTGAAACTTTCAATGTGCCTGTTCAGGGCGATGGAGTTGCTCCTGAAATCAATAGGATTGTTTCTGCTGTTCTAGGATCCATTGGACTTCCAAATTTTGCGAGTGGCGGTGAAGGAGGGATTGATGTCAGGGAGCATGATTCTCAAGGCTCTGGAAGAACTTTGGGTTCTAGTGGAATATTAGATTCGTCTCATCCTCAACCTGAACAAGCTGGTTTGCGGATTTTGTCTGATAGATCGCGTAATACCTTTGGACCTTCAGCACCAGTATCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGTCAACTTTGTCCCAATACTTAAGTCATATAAGCCATGAATTTGATGCAATTGTCAGAGAAGGCGGGGATAATGCCCAAGCAGCTGAGGCTCAAAGGAATGAAGAAACTAGATCCGTTTCTTCACGTTCGGGTTCAACTCCAGAAGGGCTTTCATCACCCGCATCCTTGGCAGAAGTTTTACTTTCTAGCAGACGAATGATTGTTGAACAAGCTGGCGAATGCCTACTTCAACTATCAAGGCAGCTAGAGAATCAAGCAAATGTAACTGATCCCTTGTTGCGATCAAGCATTCAGTCTAGGGCATTGAGAACTGGAGTTTTGTTTTATAACCTTGGTGCATTTTTACTTGAGCTTGGTCGCACAACCATGACGCTGCGTTTGGGTCAAACACCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAAACTGGAGCAAGCTTTGGTGCTGTCCCTGTGGGAGCTGCACAGTCTAACTCAAGTTTAGGTAGTGGACTTGGTTCAAGCTTTTTCCCAAGGCGTATAGATATACAGATACGACGAGGTACCTCAACAACCTCAACCAATACCAATCAAGAAGAACGCAATGATACACAATCTGCCTCAGTACAAAGAAATCCAGGTGAAAGTTCTGTTAATCAGGCAACCTCTAGGCGTCCAGATGCATCTATTGCTGCTGGGGAGCCAGGAGTAAGGTTAGTGCCAATTCGAACCATGGTTGCAGCAGCAGTACCGGGCTCCATAGGGCGTCCACCTTCAGAATCATCTGGTAATTCTATAGGGCTTTACTATCCAATTCTTGGGAGATTTCAACATGTATCTTCTGGACATGCAAATAGTGAACAGGGATCCCAACAATCAAGTCAGCATCATGCTGCAGTACCACCAACTCCTGAATCCATGTTGCAAAGGCAAAACACAGAAGATTCTGCAAGGAATGTAGGATCGTTATCAACTCCAAGCACAAGACAAGATCCATCAAATTCTCGTGTTGTGAATATCAATATTCTGGCTGCTAGTGGACCCCAAAACAACCAAGAATCTGAGAGACAAATACCAAGCAGTGTACTTCAGTTTTTAAGGACACTCTTTCCTGGTGGAGAAATTCATGTGGAAGATTCAAGTGTACAAGGAACACCTTCAGGTTCTACCTCAGATCAGGCTGCAACATCAAGGGGTGCTGCCCAAGTTCCTGAAGCACAACCTAATGTCAGTGAAGAAGGAATATTTTTGTCTAATATACTCCGTGAAATCATGCCAGTCATATCTCAACAAGTAGGGTCTGAGGGAAATCCTTCAGAAGATCATATGGCTCAAGATTCTTCAACCCAGGTCTGCATGCTTAATTGCTTTCTTTCCTTATTCTGTTGTGTGATTATATTTGCTCTTATGTCAACTTCAACTGCCAAAGCCTCTCTCACCCATCGCGAGTGCTTCTGGACTTTGACGCACACTTGGGGAATATCCATTAGTTGA 2223 0.4422 MGSSSTEKIPINNSAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSVPNHSVTELNSSTTLGHSSQVAPGVFIETFNVPVQGDGVAPEINRIVSAVLGSIGLPNFASGGEGGIDVREHDSQGSGRTLGSSGILDSSHPQPEQAGLRILSDRSRNTFGPSAPVSLGSLQPPVIPDSLSTLSQYLSHISHEFDAIVREGGDNAQAAEAQRNEETRSVSSRSGSTPEGLSSPASLAEVLLSSRRMIVEQAGECLLQLSRQLENQANVTDPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTPSEAVVNGGPAVFISPNGPNHIMVQPLPFQTGASFGAVPVGAAQSNSSLGSGLGSSFFPRRIDIQIRRGTSTTSTNTNQEERNDTQSASVQRNPGESSVNQATSRRPDASIAAGEPGVRLVPIRTMVAAAVPGSIGRPPSESSGNSIGLYYPILGRFQHVSSGHANSEQGSQQSSQHHAAVPPTPESMLQRQNTEDSARNVGSLSTPSTRQDPSNSRVVNINILAASGPQNNQESERQIPSSVLQFLRTLFPGGEIHVEDSSVQGTPSGSTSDQAATSRGAAQVPEAQPNVSEEGIFLSNILREIMPVISQQVGSEGNPSEDHMAQDSSTQVCMLNCFLSLFCCVIIFALMSTSTAKASLTHRECFWTLTHTWGISIS 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00973 740 PRINTS Ubiquitin signature 32 52 IPR019956 -
Pumo4g00973 740 PRINTS Ubiquitin signature 74 95 IPR019956 -
Pumo4g00973 740 PRINTS Ubiquitin signature 53 73 IPR019956 -
Pumo4g00973 740 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 683 - -
Pumo4g00973 740 MobiDBLite consensus disorder prediction 620 651 - -
Pumo4g00973 740 MobiDBLite consensus disorder prediction 167 196 - -
Pumo4g00973 740 MobiDBLite consensus disorder prediction 524 578 - -
Pumo4g00973 740 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Pumo4g00973 740 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Pumo4g00973 740 MobiDBLite consensus disorder prediction 428 469 - -
Pumo4g00973 740 SMART ubq_7 22 93 IPR000626 GO:0005515
Pumo4g00973 740 MobiDBLite consensus disorder prediction 261 285 - -
Pumo4g00973 740 MobiDBLite consensus disorder prediction 623 647 - -
Pumo4g00973 740 SUPERFAMILY Ubiquitin-like 17 102 IPR029071 -
Pumo4g00973 740 MobiDBLite consensus disorder prediction 178 193 - -
Pumo4g00973 740 FunFam Large proline-rich protein BAG6 14 107 - -
Pumo4g00973 740 MobiDBLite consensus disorder prediction 256 285 - -
Pumo4g00973 740 MobiDBLite consensus disorder prediction 428 475 - -
Pumo4g00973 740 Gene3D - 14 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00973 Pumo-Chr4 12517510 12528522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00973 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 5.48e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00973 K23390 - gmx:100783070 1190.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00973 4 12517510 12528522 Pumo4g00973 4 12517510 12528522 ECH