Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00971 ATGTGTGTGCAAGAGGGTGAACAAGTTGGTGAGGATATAGAGAAGAACGTTGATAACAACAGAAGGGTGTCATGGCCTTTGCATTGTGATCTCTTGCATGCCCACATGGATAACCGGGAAAAAGACTCTTCTTTTAGAACCCCCTCTGACCAGATCAGTGTTGCAAATTCATTTCCTCTAGAAAGCATATGTGAGGATGCAGAAACTGTGGACAAAAAACAGAATCTGGTGAACTTTGTCCCTACTCTTCGGTCTGGAGAGTGGTCTGATATTGGAGATCGCCCTTCCATGGAGGATACCCACATATGCATTGGAGACTTGGCAGAAAAATTTGGCAATAACGTACCGTGTGAGGAAGCCATTTCCTTTTATGGTGTATTTGACGGGCACGGAGGGAAGAGTGCTGCACAATTTGTCCGTGATCATCTGCCACGGGTGATTGTTGAGGATGCTGGCTTTCCTTTGGAACTTGAGAAGGTTGTCACAAGGTCATTTTTGGAGATTGATGCAGAATTTGCAAGATCATGTTCTATCGAGTCTTCCCTGTCTTCTGGTACAACTGCACTGACTGCAATTATATTTGGAAGGTCTTTACTTGTAGCCAATGCTGGAGACTGTCGCGCTGTATTGTCCCGTGGTGGAGGGGCTATAGAAATGTCCAAAGATCATAGGCCATTGTGCATTAAAGAAAGGATGAGGATTGAGTCTCTGGGTGGATACATAGATGATGGTTACCTGAATGGCCAGTTAGGTGTGACCCGCGCACTAGGCGACTGGCATCTTGAAGGAATGAAGGAAATGAATGGAAAGGGTGGACCATTGAGTGCTGAGCCCTGA 837 0.4588 MCVQEGEQVGEDIEKNVDNNRRVSWPLHCDLLHAHMDNREKDSSFRTPSDQISVANSFPLESICEDAETVDKKQNLVNFVPTLRSGEWSDIGDRPSMEDTHICIGDLAEKFGNNVPCEEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDAGFPLELEKVVTRSFLEIDAEFARSCSIESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRGGGAIEMSKDHRPLCIKERMRIESLGGYIDDGYLNGQLGVTRALGDWHLEGMKEMNGKGGPLSAEP 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00971 278 ProSiteProfiles PPM-type phosphatase domain profile. 84 278 IPR001932 -
Pumo4g00971 278 SUPERFAMILY PP2C-like 76 278 IPR036457 -
Pumo4g00971 278 Pfam Protein phosphatase 2C 94 276 IPR001932 -
Pumo4g00971 278 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Pumo4g00971 278 SMART PP2C_4 74 276 IPR001932 -
Pumo4g00971 278 PANTHER PROTEIN PHOSPHATASE 2C 71 278 IPR015655 GO:0004722|GO:0006470
Pumo4g00971 278 CDD PP2Cc 84 278 IPR001932 -
Pumo4g00971 278 Gene3D - 64 278 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00971 Pumo-Chr4 12502731 12505281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00971 43 278 PP2C-type Phosphatase Gene Family AT2G25620 54.622 7.08e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Pumo4g00971 PP2C 7.8e-44 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00971 K14803 - gmx:100782648 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00971 4 12502731 12505281 Pumo4g00971 4 12502731 12505281 ECH