Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00966 ATGGGTTCGTCCTCTAGTCGACTTGGCTCTCGCCCTTCTACTTCTAGTTCTACTAACAGGGTCAACCGTTTCAGTCTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCATCAGATGGAAGAACATTCATCTGAACTTCAGGTTGATTCAGCAAGAGATTTTGATGGTGAAATTCAGAAAGATACTGAGGAATCGTCTTTATCATATACAGAAGCTAGAAATAGCCGCAGTCCCCCTGCTGAAACTGCAACCTCATCTGATATGAGAACTGAGTTCTATGGGAATACTAGTGTTGAAGGTTATTCTAGAAATGTTGCAACAAATAGTCAGAGGAACTGCTTGTCTGAACATGAGGAGCTAGTCCCTCCTTATCAGGTAAGTGCTGGTCATAGTGGTCATGAATCATATAGTGATAGTAGCAACACAGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAGTCAATGATGTTAATAATCCAGTGGTTAGTGGTGTCTCTCAAGTCTCTCATGAGACAATGCGTCCAAGAAGTTCAACCCCTCAAGAGCATGGGAATTTCAGTTCTGGTGAAATTTCTGTTGAGAATCACACTAGTGCATTCATATCCATCCAGAATTCTTCCAACCCTATTGCTCAAGTTTCCAACTTAGCAGCAACTTCTCAAGTGCCAGAAGATGAACCTCGTCGCGAGACAATACCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAAGAGGGCCGGGAAATGATAGTGTGCTTCAAGTTGATGTGGTCACAATATCTTCCAACATTTTGTCTGGAAGCAGTGCTGATGCTGATGATCATGATGCCAGAAGGAATGGTAGAAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCTGCTGGGGGTGCTGATGATTCTGGATCTCAAGATCGATGGCTAGTTGATTTTGGTGGTGATTTGTCAAATGATGGGGTTGGAGGTGCTTCTGGATATATGGGCAGTAGAATTCACAGATTGAATGAACGAAGAATGCAGCACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGCGGTTTTGATGAGATTGGTCGGTGGAATTCATGTCCATTAGGACTCCATGCAGATGGCATGTGCTCATGTGAGTCTTCCCCAATGGCCGAGGAATCTAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGGATCACTGTCTCTATCCATGGTCTCACTCCCTGCACCTGAATCAATTGTTGATTCCTTCCCTCTGAAGTCTCACAAAAAGGTTGATGTGGCTGATGGAGGCAATGATGCTGAGCAATGTTACATATGTCTGGCGGAGTATGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCTTCCACGAGTATCACATGTCTTGTGTTGATAAGTGGCTTAAAGAAATACATGGTGTATGTCCTCTGTGTCGTGGCAATGTCTGTGGAGGGTTCACAGAGTCTTCTGCCCCCCACTCAGAAGTGCAGTCTCATTGA 1626 0.4422 MGSSSSRLGSRPSTSSSTNRVNRFSLSSLLCGTSTSRSIHQMEEHSSELQVDSARDFDGEIQKDTEESSLSYTEARNSRSPPAETATSSDMRTEFYGNTSVEGYSRNVATNSQRNCLSEHEELVPPYQVSAGHSGHESYSDSSNTASTSFVEQQSSDPVSVNVSANKDVVNDVNNPVVSGVSQVSHETMRPRSSTPQEHGNFSSGEISVENHTSAFISIQNSSNPIAQVSNLAATSQVPEDEPRRETIPSGLGILVSNRERGPGNDSVLQVDVVTISSNILSGSSADADDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSAGGADDSGSQDRWLVDFGGDLSNDGVGGASGYMGSRIHRLNERRMQHSRSEIWERLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVDVADGGNDAEQCYICLAEYEEGDQIRVLPCFHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSAPHSEVQSH 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00966 541 Pfam Ring finger domain 478 521 IPR001841 -
Pumo4g00966 541 MobiDBLite consensus disorder prediction 34 93 - -
Pumo4g00966 541 MobiDBLite consensus disorder prediction 1 22 - -
Pumo4g00966 541 MobiDBLite consensus disorder prediction 128 160 - -
Pumo4g00966 541 FunFam Putative RING zinc finger domain superfamily protein 446 526 - -
Pumo4g00966 541 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Pumo4g00966 541 MobiDBLite consensus disorder prediction 71 93 - -
Pumo4g00966 541 MobiDBLite consensus disorder prediction 133 160 - -
Pumo4g00966 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 525 IPR013083 -
Pumo4g00966 541 SUPERFAMILY RING/U-box 465 524 - -
Pumo4g00966 541 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 540 - -
Pumo4g00966 541 SMART ring_2 479 520 IPR001841 -
Pumo4g00966 541 MobiDBLite consensus disorder prediction 41 70 - -
Pumo4g00966 541 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00966 Pumo-Chr4 12485418 12489514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00966 349 525 C3H Transcription Factor Family AT5G45290 46.392 7.19e-42 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00966 - - gmx:100783604 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00966 4 12485418 12489514 Pumo4g00966 4 12485418 12489514 ECH