Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00960 ATGACCCATTATGTTCTGTTGCTCTGTGCCTTTAAAGAACAACTGCAGCAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTCCTGGAGAAGGAACGGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTATACGAAGGAAGCCTTGATGGTGGTGATACTCTTGGCTTTGGTCCTCTTGTCCCCACTGAAACTGAAAGATCTTTGATGGAGCGAGTCAGGCATGAATTGAAGCATGAACTCAAACAGGATTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGACGAGCGGGGAAGCTTCCAGGAGACACCACATCCCTTTTGAAAGCTTGGTGGCAAGCACATTCTAAATGGCCTTACCCCACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCACACTAATAACCCCTCATCCTCTAGTAACACCAAAAGCAAGCGCAAGAGTAGTGCAGGAGAAACCAGTAACCAGAGCTTCATGTGA 627 0.4609 MTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYEGSLDGGDTLGFGPLVPTETERSLMERVRHELKHELKQDYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNTKSKRKSSAGETSNQSFM 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00960 208 Coils Coil 105 125 - -
Pumo4g00960 208 SMART ELK_2 99 120 IPR005539 GO:0003677
Pumo4g00960 208 SUPERFAMILY Homeodomain-like 121 186 IPR009057 -
Pumo4g00960 208 MobiDBLite consensus disorder prediction 176 208 - -
Pumo4g00960 208 Pfam Homeobox KN domain 139 178 IPR008422 GO:0003677|GO:0006355
Pumo4g00960 208 Pfam KNOX2 domain 1 41 IPR005541 GO:0003677|GO:0005634
Pumo4g00960 208 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 27 196 - -
Pumo4g00960 208 ProSiteProfiles ELK domain profile. 99 119 IPR005539 GO:0003677
Pumo4g00960 208 Pfam ELK domain 99 120 IPR005539 GO:0003677
Pumo4g00960 208 FunFam homeobox protein knotted-1-like 3 isoform X1 120 181 - -
Pumo4g00960 208 ProSiteProfiles 'Homeobox' domain profile. 119 182 IPR001356 GO:0003677
Pumo4g00960 208 SMART KNOX2_2 1 42 IPR005541 GO:0003677|GO:0005634
Pumo4g00960 208 SMART HOX_1 121 186 IPR001356 GO:0003677
Pumo4g00960 208 MobiDBLite consensus disorder prediction 41 61 - -
Pumo4g00960 208 CDD homeodomain 122 183 IPR001356 GO:0003677
Pumo4g00960 208 Gene3D - 120 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00960 Pumo-Chr4 12422895 12431102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00960 1 203 Homeobox Transcription Factor Family AT5G11060 85.714 2.16e-128 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pumo4g00960 KNOX2 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00960 - - gmx:100803673 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00960 4 12422895 12431102 Pumo4g00960 4 12422895 12431102 ECH