Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00953 ATGCCGGACGGAGAATCCTCCGCCGTCGCCGGCGGCCAACCTTCCATGGAACCCTCTTTAAGTCTCTCCGATCAACTACAGTCCCCGAGTCTTTCACAAGTCAAAAATCATGATGACTCAGTCAAGAAAGATCCCCGGAAAATTGCAAGAAAGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGAGGAAAATATAATTGTGTATTTAGGGACAGGGTGTGGGAAGACCCACATTGCTGTGCTTCTTATGCATGGGATGGGTCATTTGATTCGGAAACCGCAGAAGAACATATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTCCATCAGCAAGCAAAGGTTATAGCAGACTCTACTGATTTTAAGGTTGGGACATACTGCGGAAGTTCCAAGCGCTTGAAACGTCATCAAGACTGGGAGCAGGAGATTGGACAATATGAGGTTCTTGTTATGACCCCACAAATATTACTTCACAACTTATCTCATTGTTTCATCACAATGGAGATGATTGCCCTTTTGATATTTGATGAATGTCACCATGCTCAAGTCAATAGCAACCATGCTTATGCAGTAATCATGAAAGTCTTCTACAAAAGTAATTCCATAAAGGTTCCCCGTATATTTGGCATGACTGCTTCTCCTGTTGTAGGAAAAGGTGCTTCTAGTGAAGCAAATCTAGCAAAAAGCATCAATAGTCTTGAACATATCCTTGATGCTAAGGTATACTCTGTTGAAGACAAGGAATTGCAATCTTTTGTGACCACTCCTGTGATTAATATATATCATTATGTTTCAACTGCAAGTGGGGAAACTAGCTTGTACTTGAAAATTGAGGAGATTAAACGTCAGTGCATAGCAACCCTTGGTAGGAGTATAGAAGATCACCAGAAACGAATGAATACAAAGAAACTTCTGAACAGGATGCATGATAATGTGGTTTTCGGTCTGCAGAATCTTGGCATTTGGGGAGCATTGCAAGCTAGTCGTATTCTTCTGAGTGGTGATCGTTCTGAAAGGCATGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTGTGTGTGATAAATATCTTGCTCAGGCTGCTGAACTATTTACTTCACAATGCATGATAGGTGACAGGGTAACTGATTTATCTTCTGTGGAAATATTAAAAGAGCCATTTTTCTCAGGGAAGCTTTTACGACTCATTGGGATACTGTCCAACTTTAGGTTGCAAAAGAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATACATACTACAGAAACTTGAGCTTCTAAGACAATGGAGGAGTGATTTTCTAGTAGGAGTCCATGCTGGACTGAAGAGTATGTCACGAAAGACCATGAACATCATTGTTGATAAGTTTCGCTCTGGAGAGTTGAATCTACTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTCGTCATACGATTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGTCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGGCAATAAGAAGGAACTTGACATAATTGATGGTTTTGAGAAAGATGAATACCGAATGAATATGGAAATTACTGTTCGAACATCCAATGAGACATACATAATCCCTGAGGAAAGAATATTCAGAGTTGATTCTTCTGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTACTTTAACCCCAAGCCAAATTTTTATTACTTAGATGATTCAGGGGGAATTGCCTGCCACATAACATTGCCTTCCAATGCACCAATAAACCAAATTTTGGGTACACCACAGTTGTCTATGGAGGCTTCCAAAAGAGATGCTTGCCTGAAAGCAATAGAAGAACTGTATAAATTAGGCGCTTTAAGTGATTGTCTCTTGCCAAAGCAAGATGATGCAGAGCCAGAGGAGCAGGTTTCAGGCTCTTCTGATGAAGATGAATGTGAAGATGCCATATCAAGAGGAGAATTACATGAGATGCTAGTTCCTTCTGCCTTTGGACAGTCATGGATAAACGAGGATAACATTGTACGTCTCAACTCTTACTACATAAAATTTTGTCCCTGTCCAGAGGATAGGGTCTATAAAGAGTTTGGTCTGTTCATCATGGCCCGTCTTCCGATGGAGGCTGAGAAATTGGAACTTGATCTCCATCTTGCTCACGGTCGATCTGTGATGACAAAATTTGTCCCATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTATTCTTGATAGAGTAGAGTTTGTTTCTGAGTTTGTAGACTTGGGTATGGGTGCTGAATCTCATACAAGCACATCAACCTTCTACCTTTTGCTTCCAGTCGTACGGCAAGAATATGGAAATGACATGAAAGTAGATTGGAAGACAGTGAAAAGATGCCTTTGTTCATCAATTTTCAGGCATCCAGCTGATACTATGGATAAAAAAGTTTTCCCTTTAGATATTCACCTGCAACTTGCCAATGGTTACAGAAGTGTAAGAGATGTCGAGAATAGTTTAGTGTATGCCCCACATAAGAAGATATTTTATTTTGTCACAAATATTAACCATCAAAAGAATGGATTTAGTCCTCATAATGATTCAGGCACTTCAAGCTATGTGGATTACTTCATTGAAAAGTTTTCCATTCACCTCAAATGCCCGGAACAACCACTTCTGCATGTAAAACCACTCTCCAATTTGCACAACCTGCTACACAACCGAAAGCGTGAGGATGCAGAACCACAGGAACTGGACGAATACTTAATTTATTTGCCTCCTGAGCTATGTGAACTGAAAATAATAGGCTTTTCGAAGGATATTGGCAGTTCCATATCTTTGCTACCATCAATCATGCATCGTCTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCGCATGCTATCTTCTTCCTTTCCAGAGGCAGCTGAAATTAGTGCCCTTAGAGTTTTAGAGGCTCTCACCACTGAGAAGTGTCAAGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTTGCACGTCATTTTTTTCTCATGCATGACAGCCTTCATGAAGGAGACCTTACAAAAAGGCGTTCCAATGCTGTAAATAATTCCAATTTGTTTAAGTTGGCTATTAGGCGCAATTTGCAGGTTTATATATGCGATCAGACATTTGATCCCTCTCAGTTTTATGCATTAGGCCATCCTTGCCCAAGAGTTTGTAGCAAGGAAACCGAAGAAAGCATACACTTTTGTTTAAATTCTGTTAAGGAGCAAGGAAAAGTAACGGAAACCCGATGTAACAAAAATCATCATTGGTTACATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGCTTTAAAGCTGCAATTGCCTTTCTTACATGGATTGGCATACAACTTGATTTTGAAGCTTCACAAGTGGTTGATATTTGCATAGCAAGTGCTGGCTATTTCCGTCTTTCTTCTGAAGTAGACATTCCTTCTCTTGAAGGTAAGCTAGGACATCACTTTTTTCATAAGGGTCTGCTTCTCCAGGCATTTGTACATCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATATCTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAACACGGCATTTGCCTGTCTAGCGGTAGATCGCAGTTTTGATAAATTTCTTTTATGTGATTCAAATGGCCTGTCTGAGGCAATAAAAAAGTATGTGGACTACGTTAGAAGACCTGTATCAGATAGTGGCATTAAAGAAGGGCCAAAATGTCCCAAGGCACTGGGTGACTTGGTGGAATCTTGTGTTGGTGCCATCCTTCTTGATTCAGGGTTCAATTTGAACAAAGTTTGGAAGATTATGACTTCGTTCTTGGACCCAATCATGAAATTCTCATCAAGCTTGCAGCTCAGTCCTGTTAGGGATTTGCGAGAACTTTGCCAATCTCATAATTTGGAGTTGGAGTTTGTGCCAGTGCCCTCAAAATTGACTAAAACATTTTCAGTTGAAGCCAAAGTGAGTGGGAATGATGTATTTGAAACAGCTCCAGCAACTGGCCAAAATAAAAAAGAGGCTTGCAGAATTGCTTCACAGCTACTTTTTTCAAAGTTGAAGGCTCAAGGCTGGAAAGCAAAGTCAAAAACTTTGGAAGAAGTTCTGGAATCAACTTCTAAAATGGAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACAGAGACCAATAATGCCAGGCATATAATGGTTAATGCAGACCCGTACAACAAGTCTAACCCTGAAATTCGCCCTATCCAAGAGACAGATGAAATATGCTCTCCATGTGTGAAACCTTTTGGCCAACGGCTTCAATCTTCTGCTAAGGGAGAGCTTAGTCAATTTGAAAATCGTGATTGCGGCAGTGACTTGTCAGGGACAGGAACGGCAAGATCACGATTGTATGAATTATGTGCTTCTTATTGTTGGAAACCACCTTCATTTGAATGCTGCAAGGAAGAGGGACCAGACCACCTGAAACAATTCACTTGCAAGGTGACCTTAGAGATAGAAGAGGCCCAGAATTTGATTTTAGAGTTTGTTGGGGAACCTCTGTCAAAGAAGAAAGAGGCAGCAGAGAGTGCAGCTGAGGGTGCATTTTGGTACCTACGACATGAAGGTTACCTCCCTAGTAGTAATTGA 4908 0.4059 MPDGESSAVAGGQPSMEPSLSLSDQLQSPSLSQVKNHDDSVKKDPRKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHGMGHLIRKPQKNICVFLAPTVALVHQQAKVIADSTDFKVGTYCGSSKRLKRHQDWEQEIGQYEVLVMTPQILLHNLSHCFITMEMIALLIFDECHHAQVNSNHAYAVIMKVFYKSNSIKVPRIFGMTASPVVGKGASSEANLAKSINSLEHILDAKVYSVEDKELQSFVTTPVINIYHYVSTASGETSLYLKIEEIKRQCIATLGRSIEDHQKRMNTKKLLNRMHDNVVFGLQNLGIWGALQASRILLSGDRSERHELVEAEGNSSDDSVCDKYLAQAAELFTSQCMIGDRVTDLSSVEILKEPFFSGKLLRLIGILSNFRLQKNMKCIIFVNRIVTARSLSYILQKLELLRQWRSDFLVGVHAGLKSMSRKTMNIIVDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDIIDGFEKDEYRMNMEITVRTSNETYIIPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFNPKPNFYYLDDSGGIACHITLPSNAPINQILGTPQLSMEASKRDACLKAIEELYKLGALSDCLLPKQDDAEPEEQVSGSSDEDECEDAISRGELHEMLVPSAFGQSWINEDNIVRLNSYYIKFCPCPEDRVYKEFGLFIMARLPMEAEKLELDLHLAHGRSVMTKFVPFGVVEFDKDEIKMAENFQEMFLKIILDRVEFVSEFVDLGMGAESHTSTSTFYLLLPVVRQEYGNDMKVDWKTVKRCLCSSIFRHPADTMDKKVFPLDIHLQLANGYRSVRDVENSLVYAPHKKIFYFVTNINHQKNGFSPHNDSGTSSYVDYFIEKFSIHLKCPEQPLLHVKPLSNLHNLLHNRKREDAEPQELDEYLIYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLLVAIELKRMLSSSFPEAAEISALRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDSLHEGDLTKRRSNAVNNSNLFKLAIRRNLQVYICDQTFDPSQFYALGHPCPRVCSKETEESIHFCLNSVKEQGKVTETRCNKNHHWLHRKTIADVVEALVGAFLVDSGFKAAIAFLTWIGIQLDFEASQVVDICIASAGYFRLSSEVDIPSLEGKLGHHFFHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLITSYLFSAYPKLKPGQLTDLRSLSVNNTAFACLAVDRSFDKFLLCDSNGLSEAIKKYVDYVRRPVSDSGIKEGPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDPIMKFSSSLQLSPVRDLRELCQSHNLELEFVPVPSKLTKTFSVEAKVSGNDVFETAPATGQNKKEACRIASQLLFSKLKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPIDVTETNNARHIMVNADPYNKSNPEIRPIQETDEICSPCVKPFGQRLQSSAKGELSQFENRDCGSDLSGTGTARSRLYELCASYCWKPPSFECCKEEGPDHLKQFTCKVTLEIEEAQNLILEFVGEPLSKKKEAAESAAEGAFWYLRHEGYLPSSN 1635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00953 1635 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Pumo4g00953 1635 ProSiteProfiles Ribonuclease III family domain profile. 1023 1168 IPR000999 GO:0004525|GO:0006396
Pumo4g00953 1635 FunFam Endoribonuclease dicer-like protein 44 283 - -
Pumo4g00953 1635 CDD RIBOc 1225 1375 IPR000999 GO:0004525|GO:0006396
Pumo4g00953 1635 SMART helicmild6 430 513 IPR001650 -
Pumo4g00953 1635 MobiDBLite consensus disorder prediction 12 35 - -
Pumo4g00953 1635 ProSitePatterns Ribonuclease III family signature. 1244 1252 IPR000999 GO:0004525|GO:0006396
Pumo4g00953 1635 Gene3D Dicer dimerisation domain 573 669 IPR038248 -
Pumo4g00953 1635 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1552 1625 - -
Pumo4g00953 1635 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 577 667 IPR005034 GO:0016891
Pumo4g00953 1635 SMART PAZ_2_a_3 850 998 IPR003100 GO:0005515
Pumo4g00953 1635 Pfam Helicase conserved C-terminal domain 401 511 IPR001650 -
Pumo4g00953 1635 ProSiteProfiles PAZ domain profile. 872 972 IPR003100 GO:0005515
Pumo4g00953 1635 CDD DSRM_EIF2AK2-like 1379 1446 - -
Pumo4g00953 1635 Gene3D - 1378 1457 - -
Pumo4g00953 1635 FunFam Endoribonuclease dicer-like 1 1203 1374 - -
Pumo4g00953 1635 Gene3D - 387 548 IPR027417 -
Pumo4g00953 1635 Gene3D - 47 284 IPR027417 -
Pumo4g00953 1635 SUPERFAMILY PAZ domain 869 970 IPR036085 GO:0005515
Pumo4g00953 1635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 527 IPR027417 -
Pumo4g00953 1635 ProSiteProfiles Ribonuclease III family domain profile. 1209 1353 IPR000999 GO:0004525|GO:0006396
Pumo4g00953 1635 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1551 1627 IPR014720 -
Pumo4g00953 1635 FunFam Endoribonuclease dicer-like 1 384 547 - -
Pumo4g00953 1635 SMART ultradead3 45 250 IPR014001 -
Pumo4g00953 1635 Pfam Ribonuclease III domain 1244 1353 IPR000999 GO:0004525|GO:0006396
Pumo4g00953 1635 Pfam Ribonuclease III domain 1037 1168 IPR000999 GO:0004525|GO:0006396
Pumo4g00953 1635 Gene3D - 1558 1627 - -
Pumo4g00953 1635 Pfam Type III restriction enzyme, res subunit 56 214 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pumo4g00953 1635 Gene3D Ribonuclease III domain 1206 1377 IPR036389 GO:0004525|GO:0006396
Pumo4g00953 1635 Pfam Dicer dimerisation domain 577 662 - -
Pumo4g00953 1635 FunFam Dicer-like 104 995 1180 - -
Pumo4g00953 1635 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 555 IPR001650 -
Pumo4g00953 1635 SUPERFAMILY dsRNA-binding domain-like 1551 1632 - -
Pumo4g00953 1635 SUPERFAMILY RNase III domain-like 1208 1372 IPR036389 GO:0004525|GO:0006396
Pumo4g00953 1635 Gene3D paz domain 867 970 - -
Pumo4g00953 1635 SUPERFAMILY dsRNA-binding domain-like 1335 1447 - -
Pumo4g00953 1635 SMART riboneu5 1224 1376 IPR000999 GO:0004525|GO:0006396
Pumo4g00953 1635 SMART riboneu5 1021 1188 IPR000999 GO:0004525|GO:0006396
Pumo4g00953 1635 Gene3D Ribonuclease III domain 1016 1179 IPR036389 GO:0004525|GO:0006396
Pumo4g00953 1635 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1380 1448 IPR014720 -
Pumo4g00953 1635 MobiDBLite consensus disorder prediction 1 45 - -
Pumo4g00953 1635 PANTHER DICER-RELATED 62 1451 - -
Pumo4g00953 1635 CDD RIBOc 1022 1186 IPR000999 GO:0004525|GO:0006396
Pumo4g00953 1635 Pfam PAZ domain 872 993 IPR003100 GO:0005515
Pumo4g00953 1635 SUPERFAMILY RNase III domain-like 1021 1182 IPR036389 GO:0004525|GO:0006396
Pumo4g00953 1635 CDD DEXHc_dicer 47 246 - -
Pumo4g00953 1635 FunFam Endoribonuclease dicer-like 1 572 668 - -
Pumo4g00953 1635 SMART DRBM_3 1381 1447 IPR014720 -
Pumo4g00953 1635 SMART DRBM_3 1552 1626 IPR014720 -
Pumo4g00953 1635 FunFam Dicer-like 103 867 970 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00953 Pumo-Chr4 12309911 12332172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00953 411 510 Eukaryotic Initiation Factors Gene Family AT3G19760 32.000 6.62e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00953 K11592 - gmx:100818702 3078.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00953 4 12309911 12332172 Pumo4g00953 4 12309911 12332172 ECH