Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00952 ATGTCAGGGTGGGACGAAGGAGCCGTCTACTACAGCGACCAAGCCCTCGCCGGCGACGACGGTGCCGGCGCCCGCGGTGAAGCCGGCACCGATTCAAACCACTCTCTCATCCAGAAATTCAAGGAATTCATCCGAAACTTCGAGACCACCAACAATGTCTTCCCTTACAGAGAGAGTCTCCTCCACAACCCTAAGTTCCTTCTCGTCGACATGGGAGATCTCGACACCTTCGACTCCGACCTTCCCGCCAAACTCCGCTCTAACCCCGCCGATGTCTTGCCCTTGTTCGAAACTGCAGCGGCTCAGGTTCTCGTGAATTTGAAGACGAAGGTAGCCGGGGATACCGGAGATATGGAGGATCCGACGCCAGGTGATGTTCAGATTTTGCTCACATCCAAGGAGGATCCGGTTTCGATGAGATCGCTCGGAGCTCAATATATATCAAGGCTTGTTAAAATTTCTGGGATTACTATTGCTGCATCCAGGACTAAGGCAAAGGCCACTTATGTTACCCTGATATGTAAGAATTGTAAGAAGGGAAAACAGGTTCCATGTCGGCCTGGACTTGGGGGAGCAATTGTTCCTCGATCTTGTGATCATATTCCTCAGCCTGGTGAAGAACCTTGTCCAATTGATCCCTGGCTCGTGGTTCCTGACAAGAGCAAATATGTTGATCAACAAACTTTGAAGATGCAAGAAAATCCAGAGGATGTTCCAACTGGAGAGCTTCCTAGAAACCTGCTTCTCTCTGTTGATCGTCATCTGGTTCAGACAGTGGTACCTGGCTCAAGACTGACAATCATGGGAATTTATAGTGTCTACCAGGCTTCTAACTCTTCTACATCCCACAAAGGAGCAGTTGCAGTTAGACAGCCTTATATTAGGGTTGTAGGAATAGAAGAAACAAATGAGACCAACTCTCGGGGTCCGGCTGCATTTACACAAGAGGAGATAGAAGAATTCAAAAAATTTGCCGCTGAACCTGATGCATATAAAAATATCTGCTCCATGATTGCTCCATCTATATTTGGGCATGATGATGTCAAAAAGGCTGTAGCCTGTCTTCTGTTTGGAGGGTCAAGAAAGAATTTGCCTGATGGAGTCCGGTTAAGAGGTGATATCAATGTATTGCTTCTGGGGGATCCATCTACAGCAAAGTCACAGTTTCTAAAGTTTGTTGAAAAGACTGCCCCTGTTGCTGTTTATACTTCTGGAAAAGGCTCATCAGCTGCTGGCCTGACAGCTTCTGTAATTCAAGATAGCGGCACGCGTGAGTTTTATCTGGAAGGAGGGGCCATGGTCTTGGCCGACGGAGGTGTTGTTTGCATTGATGAGTTTGATAAGATGAGGCCAGAAGATAGGGTTGCCATTCATGAGGCAATGGAACAACAAACTATATCTATAGCCAAAGCGGGAATAACAACTGTTCTTAATTCAAGGACTTCAGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGTTATGATGATCTTAAGACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATTTTCATTGTGAAAGACATCAGAATGTACAGTCAAGACAAGATAATAGCTAATCATATCATAAAGGTCCATGCATCAGCTGGTGCAAGGATGGGAGAGAGCAGAACTTTTAAAGAAGAGAATTGGCTGAAGAGGTATTTACAATATTGTCGAACTCAATGCCACCCTCGTCTATCAGAATCTGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAGGATATGAGGCAACAAGCAAATGAAACTGGAGAAGCTGCAGCAATACCAATTACTGTAAGGCAGCTGGAAGCTATTGTTAGGTTGAGTGAGGCACTTGCAAAGATGAAACTATCTCATCTTGCAACTGAGGAGAATGTGCAAGAAGCAGTAAGGCTTTTCAGCGTGTCCACAATGGATGCAGCTAAGTCGGGAATAAACCAACAAATAAATCTTACACCTGACATGGCAAATGAGATAAAGCAAGCTGAAACTCAGATAAAGAGAAGAATCGGGATTGGAAACCACATATCAGAAAGAAGGCTGATTGATGACCTCAGCAGAATGGGAATGAATGAATCTATTGTGAGAAGAGCTCTTATAATCATGCACCAGAGAGATGAAATAGAGTACAAGAGAGAAAGGCGTGTTGTATTTAGGAAAGCATGA 2199 0.447 MSGWDEGAVYYSDQALAGDDGAGARGEAGTDSNHSLIQKFKEFIRNFETTNNVFPYRESLLHNPKFLLVDMGDLDTFDSDLPAKLRSNPADVLPLFETAAAQVLVNLKTKVAGDTGDMEDPTPGDVQILLTSKEDPVSMRSLGAQYISRLVKISGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAIVPRSCDHIPQPGEEPCPIDPWLVVPDKSKYVDQQTLKMQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLTIMGIYSVYQASNSSTSHKGAVAVRQPYIRVVGIEETNETNSRGPAAFTQEEIEEFKKFAAEPDAYKNICSMIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIQDSGTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIANHIIKVHASAGARMGESRTFKEENWLKRYLQYCRTQCHPRLSESATTLLQNHYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHLATEENVQEAVRLFSVSTMDAAKSGINQQINLTPDMANEIKQAETQIKRRIGIGNHISERRLIDDLSRMGMNESIVRRALIIMHQRDEIEYKRERRVVFRKA 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00952 732 FunFam DNA helicase 31 119 - -
Pumo4g00952 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 648 IPR027417 -
Pumo4g00952 732 Pfam MCM AAA-lid domain 558 647 IPR041562 -
Pumo4g00952 732 SUPERFAMILY Nucleic acid-binding proteins 39 296 IPR012340 -
Pumo4g00952 732 Pfam MCM P-loop domain 318 540 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo4g00952 732 FunFam DNA helicase 166 224 - -
Pumo4g00952 732 ProSitePatterns MCM family signature. 439 447 IPR018525 GO:0003677|GO:0005524|GO:0006260
Pumo4g00952 732 SMART mcm 135 649 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pumo4g00952 732 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 32 690 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pumo4g00952 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 431 445 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo4g00952 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 483 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo4g00952 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 459 472 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo4g00952 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 371 386 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo4g00952 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 510 518 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo4g00952 732 Gene3D - 311 666 IPR027417 -
Pumo4g00952 732 Gene3D - 32 116 - -
Pumo4g00952 732 Pfam MCM N-terminal domain 38 109 IPR027925 -
Pumo4g00952 732 Pfam MCM OB domain 139 274 IPR033762 -
Pumo4g00952 732 CDD MCM5 333 647 - -
Pumo4g00952 732 Gene3D - 139 274 IPR012340 -
Pumo4g00952 732 Gene3D - 166 224 - -
Pumo4g00952 732 ProSiteProfiles MCM family domain profile. 330 536 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo4g00952 732 FunFam DNA helicase 311 662 - -
Pumo4g00952 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 140 155 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Pumo4g00952 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 166 178 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Pumo4g00952 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 642 659 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Pumo4g00952 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 290 302 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Pumo4g00952 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 566 581 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00952 Pumo-Chr4 12298188 12303506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00952 1 732 Core DNA Replication Machinery Family AT2G07690 77.459 0.0 1181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00952 K02209 - gmx:100800649 1393.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00952 4 12298188 12303506 Pumo4g00952 4 12298188 12303506 ECH