Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00951 ATGGCGCCTCAGAAACTGACCGATTACGAACGCAAACGGCTCGAGAACATTCGCCGCAACGATGAAATGATGGCTGCCCTCAAACTCCATTCCAAAGCCACCCAACTCTCCAATTCCAAGCGTCAAAGGGTTGGAACCAAATCCTACAACGTGAAATCGGAAAAGAAGCCCAAAACCGAAACCCCAATTGTGATTAGGCGCTCCCTGCGAACAAGGGGTATTCCACCGGATTCCAAAGGTCTTGACGGAGATACCGTGGGTCCCACCACTCCCACCAAAGCCGAACCTTCCGTTGTAAGTTTGGGTCCTCTTTCCATGCATGATGCTCGTGAAAGCGCTCACTCTGACAGCGCCTTCGTTGAATCACTCATGGGTATGGCCCAAAAGGAGGCCCAAGATGCTAGTGTCAAAAAAGAGACAGTGGAGGCTTCTCTTGGGTTGGAATCTCTGCATTTGGATCCCGAGAATATTGCGCGGGTTGTTCCTGGAAGGATAACCAGTGTGCAGTTTTTTCCTTCCAGTAGTGTCAAAATGATCGCTGTGGGTAACAAGTTTGGGAATGTTGGGTTTTGGAATGTGGGACAAAGTGATGTTCATTTATACCGTCCCCATAAGGCTCCCATTTCTGGGATCTTGATTCAACCACATTGCTTGTCCAAGATATACACAAGTTGCTATAATGGAATTCTTAGGCTAATGGATGCTGACAAGGAAATCTTTGATCTGGTATTTGAGAGTGATGAAAGTATATATGCTCTCTCTCAACCAACAAATGAGACAAACAGCCTATATCTTGCTGAGGGTTCTGGAGGTTTGACTATTTGGGATAACAGGATTGGAAAACGTTCGTCGCACTGGGTTTTGCATGAAAGTAGAATTAACACAATAGATTTCAACTGCGAAAACCCTCATATTGTAGCTACTAGTTCCTCTGATGGAACTGCTTGCACCTGGGATTTGAGATATACTGATGGGGATAAGCTCACAGCCTTGAGGACATTTACCCACAAAAGATCTGTGCAATCTGCTTACTTCTCTCCTTCTGGATGTAGCCTGGCAACTACAAGCTTGGACAACACAATTGGTATTTACAGCGGAGCTAACATGGAGGATGCTGCTGTTATTTATCATAACAATCAGACTGGCAGATGGCTTTCTACTTTCAGAGCAAAATGGGGTTGGGATGACTCATATCTCTTTGTTGGAAATTTGAAAAGAGGAGTTGATGTGGTCTCAGCAGTTCAAAGGAAAATAGTTATGACTCTAGAGAGCCAGCACATGTCTGCCATTCCTTGCAGATTTGATAGACACTCTTACGAGGTTGGGATGCTAGCAGGAGCTACAAGTGGAGGCCAGGTTTATATTTGGACGTCGCGCTAG 1380 0.4551 MAPQKLTDYERKRLENIRRNDEMMAALKLHSKATQLSNSKRQRVGTKSYNVKSEKKPKTETPIVIRRSLRTRGIPPDSKGLDGDTVGPTTPTKAEPSVVSLGPLSMHDARESAHSDSAFVESLMGMAQKEAQDASVKKETVEASLGLESLHLDPENIARVVPGRITSVQFFPSSSVKMIAVGNKFGNVGFWNVGQSDVHLYRPHKAPISGILIQPHCLSKIYTSCYNGILRLMDADKEIFDLVFESDESIYALSQPTNETNSLYLAEGSGGLTIWDNRIGKRSSHWVLHESRINTIDFNCENPHIVATSSSDGTACTWDLRYTDGDKLTALRTFTHKRSVQSAYFSPSGCSLATTSLDNTIGIYSGANMEDAAVIYHNNQTGRWLSTFRAKWGWDDSYLFVGNLKRGVDVVSAVQRKIVMTLESQHMSAIPCRFDRHSYEVGMLAGATSGGQVYIWTSR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00951 459 MobiDBLite consensus disorder prediction 31 46 - -
Pumo4g00951 459 MobiDBLite consensus disorder prediction 71 97 - -
Pumo4g00951 459 SUPERFAMILY WD40 repeat-like 161 456 IPR036322 GO:0005515
Pumo4g00951 459 PANTHER UNCHARACTERIZED 4 458 - -
Pumo4g00951 459 FunFam WD repeat-containing protein 76 156 458 - -
Pumo4g00951 459 ProSitePatterns Trp-Asp (WD) repeats signature. 306 320 IPR019775 -
Pumo4g00951 459 Gene3D - 156 459 IPR015943 GO:0005515
Pumo4g00951 459 MobiDBLite consensus disorder prediction 31 58 - -
Pumo4g00951 459 SMART WD40_4 151 192 IPR001680 GO:0005515
Pumo4g00951 459 SMART WD40_4 327 365 IPR001680 GO:0005515
Pumo4g00951 459 SMART WD40_4 194 234 IPR001680 GO:0005515
Pumo4g00951 459 SMART WD40_4 279 319 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00951 Pumo-Chr4 12293160 12296269 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00951 164 410 U-box Gene Family AT1G04510 22.989 5.25e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00951 K24755 - gmx:100800122 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00951 4 12293160 12296269 Pumo4g00951 4 12293160 12296269 ECH