Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00945 ATGGCTTCGAATCTCACTGTTTTCTTTACTGTTCTTCTTACCTTCTTCCTTCCTCTCAAATCTCACTCCTCTACAGAAAACCCTTCGTGGGTGAAAGCCGGTTATTACTATTCAGACAGTGAAATTTCTGCTTCAGACATAGAAGCTAAGCTTTTCACTCACCTTTTATGCGCTTTTGCTTTCATAAACCCCACCAGCTACAACATCTTCATCAACTCTTCTGAGGAGCACAAGTTCTCCGCCTTCACCAACACGGTGAAGCTCCAAAACCCATCTGTTTCAACGCTTCTATCCATCTGGGAGGACTCCTCAGTGTTCACCTCAATCCTAAACCAATCTTCTCATAGAAAAATTTTCATTGATTCTTCAATCAGAACAGCCAGGCTCTATGGCTTCCATGGCATAGACCTCAATGGGGCATGGCCAAGGCAAGAGGGTTCAGAGGTTACAAATTTTGGAACCCTTTTGAAGGAATGGCGTGCTGCAATAACTTCTGAGGCAAGAAACTCAAGCAAGCCAGAGTTGTTGTTGGTGATGGCTGGTTACTACCTCAAGGCTTCAGACACTTTGAGTTACCCCTTTGATTCAATGCAGGAGAATTTGGATTGGGTGCATTTTGTGGCATATGATTACTATCTTCCTAAGAGGGACAATGTCACAGGTTTTAATGCAGCTTTGTATGGTTCATCTGGTTGGGATAACACTGATTCTGGCATCAAAGAGTGGAGGAGGAGGGGTTTTTCTTCTAACAAACTGTTAATTGGGTTGCCTTATCATGGATATGCGTGGACACTTGTGACCCCTGGAGCAAACACTGGCGAGGGAGCACCTGCATCAGGACCTGCTGTTACAATGGATGGTGCCATGGGTTATAAGTTTATAAAGAGTTACATTAGAAGCTTTGGAAATGTTGTTTCACATTACAATGCTAGTTTTGTGGTGAGCCAGTTCACTGTTGCGTCCACCACTTGGGTTAATTTTGATGATGCGCAGGTAATCAGGGCCAAAGTTTCTTATGCAAGGAAAAATGGGCTACTTGGTTACAACGTGTTCCAAGTAGGCAATGACGAAAATTGGGAACTTTCAAGGGCAGCTCAAGAAGTAGATGAAGAAATTAAAGATAATCATAAGAGGAGGTTGGTGATAATTGTTCTGCTTACAACTCTGACTTTGGCTCTTCTATTGGGAATAGTATTTTGCTACTACCACCGAGTTATCTCACAATTAAAGTGGCAACAAATAACTTCTCAAAAGATAATAGGATTGGAGAGGGTGGATTTGGCACAGTGTACAAGTGGGTATGTACCTCCTGAGTATGTGAGAAAAGGCATATACTCAACGAAGTACGATGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGCGGAAAGAGGACTTCATGTTATTATGGCACACATGAAAATATGACCCTTTTGGAATATGCATATGAGCTGTGGAGGGAAGGTAGAGGTGTGGAGTTTGTTGACCCGTCATTGGATGATACAACATCACCTTGTAAAATCATGAGATGCATGCATGTGGCTCTGTTGTGCGTTCAAGACAACTCTGCAGATAGACCTTCCATGTTGGAAGTTGATTCACTGCTGAAGAATGAAGGTGCAGCTATTGGTACTCCCAAAATGCCTGCGTTTTCAGTTAATAAACGTGAAGATGAGGAAGAAACATCTCACAGTGGGATCAAATTTTATTCAATCAATGATGTTACAATTTCTCAACCGGCACCAAGATGA 1755 0.4211 MASNLTVFFTVLLTFFLPLKSHSSTENPSWVKAGYYYSDSEISASDIEAKLFTHLLCAFAFINPTSYNIFINSSEEHKFSAFTNTVKLQNPSVSTLLSIWEDSSVFTSILNQSSHRKIFIDSSIRTARLYGFHGIDLNGAWPRQEGSEVTNFGTLLKEWRAAITSEARNSSKPELLLVMAGYYLKASDTLSYPFDSMQENLDWVHFVAYDYYLPKRDNVTGFNAALYGSSGWDNTDSGIKEWRRRGFSSNKLLIGLPYHGYAWTLVTPGANTGEGAPASGPAVTMDGAMGYKFIKSYIRSFGNVVSHYNASFVVSQFTVASTTWVNFDDAQVIRAKVSYARKNGLLGYNVFQVGNDENWELSRAAQEVDEEIKDNHKRRLVIIVLLTTLTLALLLGIVFCYYHRVISQLKWQQITSQKIIGLERVDLAQCTSGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGTHENMTLLEYAYELWREGRGVEFVDPSLDDTTSPCKIMRCMHVALLCVQDNSADRPSMLEVDSLLKNEGAAIGTPKMPAFSVNKREDEEETSHSGIKFYSINDVTISQPAPR 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00945 584 Gene3D Glycosidases 45 357 - -
Pumo4g00945 584 MobiDBLite consensus disorder prediction 548 567 - -
Pumo4g00945 584 Pfam Protein tyrosine and serine/threonine kinase 431 533 IPR001245 GO:0004672|GO:0006468
Pumo4g00945 584 Gene3D - 258 327 IPR029070 -
Pumo4g00945 584 PANTHER CHITINASE 21 372 - -
Pumo4g00945 584 Pfam Glycosyl hydrolases family 18 35 356 IPR001223 GO:0005975
Pumo4g00945 584 SMART 2g34 30 356 IPR011583 GO:0008061
Pumo4g00945 584 SUPERFAMILY (Trans)glycosidases 30 368 IPR017853 -
Pumo4g00945 584 SUPERFAMILY Protein kinase-like (PK-like) 428 559 IPR011009 -
Pumo4g00945 584 Gene3D Transferase(Phosphotransferase) domain 1 406 544 - -
Pumo4g00945 584 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 30 372 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00945 Pumo-Chr4 12243340 12247192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00945 1 368 Glycoside Hydrolase AT4G19810 42.204 1.25e-90 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo4g00945 Glyco_hydro_18 6.8e-54 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00945 - - aprc:113847882 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00945 4 12243340 12247192 Pumo4g00945 4 12243340 12247192 ECH