Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00935 ATGGTGGTCAGAGACCGTTTTCCGGTGGGTATGCATGTACTTGCCGTTGATGACGACCAAACATGTCTCACAGTGTTGGAGAACATGCTTCGCAAATGCCAGTATAATGTCACTACAACTACCGAGTCAATCAAGGCGCTAGAAATGTTGAGGAAAAACACAAACAAGTTTGACCTTGTTATTAGTGATGTAAATATGCCAGACATGGATGGGTTTAAGCTGCTTGAGCTAGTGGGACTTGAAATGGACTTACCTGTTATCATGTTGTCAGGATATGGTGATACAGAGCGGGTGATGAGAGGTGTTTTACATGGTGCTTGTGACTATTTAATGAAACCAGTTCGAATCGAAGCGTTACAGAACATATGGCAACATGTAGTGCGAAGGAAGATTGATTGCAAGGATAAGAATAAGATTGCAAGTGAGGAAAAAGCCTGCAGTATGGCTGGTATGTTTGCAAATGAGGAGAAAGCCTGCTATATGGTTGGGGAGTGTAGTCAAGCCATGGCATTAAAAAATAATGCTGGCCAGAATAATAAACTGGGTCAAAAAAGGAAGGAACAAAGTGAGGATGAGCAAGAGGAAGAATATGATCAAGAGAATGAGGAACCCTCAAATCAGAAGAAGCCTCGTTTAGTTTGGGATGCCGAGTTGCATAGCAAATTTCTTGCTGCCATTAATCAACTGGGAATTGACAAGGCTTTTCCCAAGAGAATACTTGACTTGATGAATGTCGAAGGACTTACAAGAGAAAACGTAGCAAGCCATCTGCAGAAATACAGACTCGGTCTCAAAAAGTCTACTCAACAGGCTAGCATGGTTGCTACATTGGGTAGCAGTGATCCTTACCTGCAGATGGATTCAATAGAAGGCTTTCGCACTTCGTTGGGATCAAGAGGAATGTTAAGCACCACATTACCATCATATGCATCTGGTGGAATGTTTTGTAGGCTGAACTCCCCATCTGGCTTGAACATGAGAGGAATTAACTCTGCACTTGTTCGGCCTGTTCAGTCTCAAAACATTAATAGCAGGTCCATAAAAGCACTTGGAAACATGCAACTGTCCATGTTTTCTGCAAATCAAACCTCAAGTTTATTACAGGGCATTCCAACATCAATCGATGCTGACCAATTTCAGCAGAACAACTGTTCAACTGGTATTAGGAAGTTGAGTCCACTTGATGATTCAAGTGGATTTAAAGTTTCCTCTGGTTTCTCAGACAGTAGAGCTACCGTTAGAAATCCAAATAATTCTCTACATGGTCACTCAAATAATCATTTACTTTTACAAGAAAATTCCCCACCAACACATAATTCAGGAGCATTCAGAAATCACTCTTCTCTTGGAGCTGCTTCGGTGAACACACAATCTTTTGACCCTGGCATCTGTGAGTTGGATTATAATTGGTGTAATAAAAGCTGGCAGGGAACCACTCAGATATCTAAGTTTCCTGCCAATACTTCTGCAGTCAGTAAGGTTTTCAATAATGATCAGCTGGCTCAAAATAACTTAAACTTTTCCTCATCCACTTTGTGCAGTGGGAACAGTCCAGTTAATTTTTCTTCCACTAGTGCTATTGCTGATCCCTTGGAGGATGCTGGAGGTGAGCTGCAATGTCAAGAAGGCTTACTTGAGAATATCTTACTGACTACATGTTACACCCAGCATCAAAGCTGGGAAGCAGATAAGTCTGTCTCTCCTAAAGGAGACACTAGTTCCTTAGGGCATAGTTTAGACCAAAATAATACAGTTTGCAGCAAGAGAATTGATGCATCTTTGGTTGGCCAATTGAATGAGGTTAATCCATCAATCACACAGTTCAGTGAAGGTGAGAAATTATATTCAATGAAGTCAACTGATGCCTGCATTTTGCAAAGCATGGAGTCCCAAGAAGGACTCATGCAGAATACTTTTGGGTCCAACTTGGATGACATAATGAGTGAAATAACCAAACAGGAGCAAAATGCGATCATGTTGATGGATGGAGAAATGGAGTTTGATGCTTACCATGTTGGATCATGCATTTGA 2031 0.4126 MVVRDRFPVGMHVLAVDDDQTCLTVLENMLRKCQYNVTTTTESIKALEMLRKNTNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSGYGDTERVMRGVLHGACDYLMKPVRIEALQNIWQHVVRRKIDCKDKNKIASEEKACSMAGMFANEEKACYMVGECSQAMALKNNAGQNNKLGQKRKEQSEDEQEEEYDQENEEPSNQKKPRLVWDAELHSKFLAAINQLGIDKAFPKRILDLMNVEGLTRENVASHLQKYRLGLKKSTQQASMVATLGSSDPYLQMDSIEGFRTSLGSRGMLSTTLPSYASGGMFCRLNSPSGLNMRGINSALVRPVQSQNINSRSIKALGNMQLSMFSANQTSSLLQGIPTSIDADQFQQNNCSTGIRKLSPLDDSSGFKVSSGFSDSRATVRNPNNSLHGHSNNHLLLQENSPPTHNSGAFRNHSSLGAASVNTQSFDPGICELDYNWCNKSWQGTTQISKFPANTSAVSKVFNNDQLAQNNLNFSSSTLCSGNSPVNFSSTSAIADPLEDAGGELQCQEGLLENILLTTCYTQHQSWEADKSVSPKGDTSSLGHSLDQNNTVCSKRIDASLVGQLNEVNPSITQFSEGEKLYSMKSTDACILQSMESQEGLMQNTFGSNLDDIMSEITKQEQNAIMLMDGEMEFDAYHVGSCI 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00935 676 Gene3D - 205 267 - -
Pumo4g00935 676 Gene3D - 11 146 - -
Pumo4g00935 676 MobiDBLite consensus disorder prediction 176 211 - -
Pumo4g00935 676 FunFam Two-component response regulator 205 268 - -
Pumo4g00935 676 PIRSF RR_ARR_type-B 1 676 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pumo4g00935 676 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Pumo4g00935 676 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
Pumo4g00935 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 338 IPR045279 GO:0009736
Pumo4g00935 676 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Pumo4g00935 676 Coils Coil 183 203 - -
Pumo4g00935 676 MobiDBLite consensus disorder prediction 404 445 - -
Pumo4g00935 676 Pfam Myb-like DNA-binding domain 213 261 IPR001005 -
Pumo4g00935 676 SUPERFAMILY CheY-like 10 134 IPR011006 -
Pumo4g00935 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 265 IPR017930 -
Pumo4g00935 676 SUPERFAMILY Homeodomain-like 207 266 IPR009057 -
Pumo4g00935 676 CDD REC_typeB_ARR-like 13 127 - -
Pumo4g00935 676 SMART REC_2 11 123 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00935 Pumo-Chr4 12087847 12091399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00935 5 383 Response Regulator Gene Family AT2G25180 49.482 8.33e-108 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo4g00935 Response_reg 1.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00935 - K14491 gmx:100803040 1099.73