Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00924 ATGTTTAACAATGTGCCCTCCCCTCGAAAGGATGAGAGGATAGAATACCATATATACCGTGTACAGAGCGAGCTCATCTTAAAAGCGCAATGCTCTCTTGCACTCCTCTTCATTAATCTCTCTCTCTCTCATCTCATCTCATCTCATCTCATGCAACCTTGTACCAGAGAAATGCAAGGCCCTAACACTAACTCTCTCTTCAACAACAATAGTAATAATCAGCAGCAGATCCACTTCGACCCCACTTCCAACGACGATTTCCTCAAGCAAATGCTCTCTAACCTCCCTTCTTCCTCCTGGAACCTCGACCCCAAACCAAACCCTTTTTGGGACCCCAATTCCGATGAAACGACACCCGATAATAACGTCGTTTTCCCATACGACGTCGAACACGCCAACTTGGCCTCCAAGTTTCGGAACCACCAGATCACCGACAACGACAAGGCCTCCACTCTCATGCTCCACCACCACCTCTTCCTCTCCTCCGCCGCCGCCATTTCCCCCCTCTTTCACATGCCTTTTGACTCCTCCTCACGAAACGACGTCGTTGACACCCCCTCCTTCAAATCTCCCACTCCCAACGGTGAGGCGGCTTCTGTTCAAGCTCTCTACAACGGCTTCTCCGGATCTCTCCAAGGCGCCGCCCAACCCTCTCACCATTTTCAACAACATCCTCAGGGGCCGAGTTTTGGAGCTGCTTCGGCTCCGGCTAGTGGTGGTGGTTCCGGTCAGCCGAAGCAGAGGGTTAGAGCAAGGAGGGGACAAGCCACGGACCCACATAGCATCGCGGAAAGGTTACGGAGGGAGAGAATCGCAGAGCGAATGAAGGCCCTGCAAGAACTGGTTCCTAATGCCAACAAGACTGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAGGTTTTAAGCATGAGCAGATTGGGCGGTGCAGCGGCTGTCGCACCCCTTGTTGCTGATATATCCTCTGGGGGAGGCGGTGATTGCATTCAAGCCAAACGCAACAACAACGGTAACTCAAACGACAACACCCTTGCCATGACGGAGCAACAAGTGGCGAAGCTCATGGAGGAAGACATGGGCTCCGCCATGCAGTACCTACAGGGCAAGGGTCTATGCCTCATGCCTATTTCTCTGGCTAGCGCAATCTCGAAAGCCACGTGTCACACAAGGAGCCCCTTCATCAACGGTGATGGACCCTCCTCTCCCGGAATGTCCGCACTCACTGTGCAGTCTGCTACTGTGGGAAACGGAAACGGCGTCGTCAAAGACGCGGCCTCCGTTTCCAAGTCCTGA 1320 0.5295 MFNNVPSPRKDERIEYHIYRVQSELILKAQCSLALLFINLSLSHLISSHLMQPCTREMQGPNTNSLFNNNSNNQQQIHFDPTSNDDFLKQMLSNLPSSSWNLDPKPNPFWDPNSDETTPDNNVVFPYDVEHANLASKFRNHQITDNDKASTLMLHHHLFLSSAAAISPLFHMPFDSSSRNDVVDTPSFKSPTPNGEAASVQALYNGFSGSLQGAAQPSHHFQQHPQGPSFGAASAPASGGGSGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSGGGGDCIQAKRNNNGNSNDNTLAMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLASAISKATCHTRSPFINGDGPSSPGMSALTVQSATVGNGNGVVKDAASVSKS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00924 439 MobiDBLite consensus disorder prediction 98 122 - -
Pumo4g00924 439 SMART finulus 261 310 IPR011598 GO:0046983
Pumo4g00924 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 304 IPR011598 GO:0046983
Pumo4g00924 439 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 84 390 - -
Pumo4g00924 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 315 IPR036638 GO:0046983
Pumo4g00924 439 MobiDBLite consensus disorder prediction 251 266 - -
Pumo4g00924 439 MobiDBLite consensus disorder prediction 211 266 - -
Pumo4g00924 439 MobiDBLite consensus disorder prediction 211 229 - -
Pumo4g00924 439 Pfam Helix-loop-helix DNA-binding domain 260 305 IPR011598 GO:0046983
Pumo4g00924 439 Gene3D - 250 312 IPR036638 GO:0046983
Pumo4g00924 439 FunFam Transcription factor bHLH66 252 317 - -
Pumo4g00924 439 MobiDBLite consensus disorder prediction 175 196 - -
Pumo4g00924 439 MobiDBLite consensus disorder prediction 178 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00924 Pumo-Chr4 11997200 12001506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00924 232 439 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 63.248 2.24e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g00924 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00924 - - gmx:100801457 540.421