Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00922 ATGAGTGAGAAAGAGAAAGGCGAGGGGCAATCGACGTTGCTGCACGGGAAGTATGAGCTCGGTCGCGTGCTGGGGCATGGAACGTTCGCGAAGGTGTACCACGCGCGGAACCTGAAGACAGGGCAGCACGTGGCGATGAAGGTGGTGGGAAAAGAAAAAGTGATAAAGGTTGGAATGATGGAGCAGATCAAGAGGGAGATCTCGGTGATGAAGATGGTGAAGCACCGGAACATCGTGGAACTCCACGAAGTCATGGCCAGCAAGTCCAAGATCTACATCGCCATGGAACTCGTCCGCGGAGGGGAGCTCTTCAACAAGGTCTCCAAAGGACGCTTAAAGGAGGACGTGGCAAGACTCTACTTTCAGCAATTAATCTCCGCCGTTGATTTCTGCCACAGCCGCGGCGTCTACCACCGCGACCTCAAGCCGGAGAACCTCCTCCTGGACGAATATGGTAACCTTAAGGTCTCCGACTTCGGACTCACTGCCTTCTCGGAACACCTCAAGGAGGACGGGTTGTTACACACCACGTGCGGCACGCCTGCGTACGTGTCGCCGGAAGTGATAGCGAAAAAAGGCTACGATGGTGCCAAGGCTGATATATGGTCATGTGGAGTAATCCTCTATGTTCTCCTCGCAGGGTTTTTACCCTTTCAGGATGATAATTTGGTTGCCATGTATAAGAAGATTTACAGAGGGGACTTCAAGTGTCCACCATGGTTCTCTCTTGACGCGAGGAAGCTTGTCACGAAACTGCTCGACCCGAACCCCAATACGCGGATTAGTATTTCCAAGGTGATGGAGTCTTCTTGGTTTAAGAAACCTGTGCCGAGGAGGGTGGAGGAGGTGGTTGAGAAGGTGGATTTGGAGGAGAAGATTGAGAGTCAGGAGACGATGAATGCTTTTCACATAATCTCGTTGTCGGAGGGGTTCAATTTGTCGCCGTTGTTTGAGGAGAAGAGGAAGGAGGAGATGAGATTCGCCACCGCGGGGACGCCGAGCAGCGTAATTTCGCGGCTGGAGGAAGTGGCCAAGGCGGGGAAGTTCGACGTCAAGAGTAGTGAGACCAAGGTGAGGCTTCAGGGGCAGGAACGTGGGAGGAAGGGGAAGCTTGCGATTGCGGCGGATATCTACGCCGTGACTCCGTCGTTTCTGGTGGTGGAGGTGAAGAAGGACAATGGAGATACCTTGGAGTATAACCAGTTCTGCAGCAAACAGCTTCGTCCTGCGCTTAAAGACATCTTCTGGAATTCGCCACAGAATTCCCCACCTGCTAGTGCTTGA 1284 0.5304 MSEKEKGEGQSTLLHGKYELGRVLGHGTFAKVYHARNLKTGQHVAMKVVGKEKVIKVGMMEQIKREISVMKMVKHRNIVELHEVMASKSKIYIAMELVRGGELFNKVSKGRLKEDVARLYFQQLISAVDFCHSRGVYHRDLKPENLLLDEYGNLKVSDFGLTAFSEHLKEDGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIYRGDFKCPPWFSLDARKLVTKLLDPNPNTRISISKVMESSWFKKPVPRRVEEVVEKVDLEEKIESQETMNAFHIISLSEGFNLSPLFEEKRKEEMRFATAGTPSSVISRLEEVAKAGKFDVKSSETKVRLQGQERGRKGKLAIAADIYAVTPSFLVVEVKKDNGDTLEYNQFCSKQLRPALKDIFWNSPQNSPPASA 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00922 427 CDD STKc_SnRK3 17 271 - -
Pumo4g00922 427 Pfam NAF domain 297 352 IPR004041 GO:0007165
Pumo4g00922 427 FunFam Non-specific serine/threonine protein kinase 294 416 - -
Pumo4g00922 427 FunFam Non-specific serine/threonine protein kinase 8 300 - -
Pumo4g00922 427 Gene3D Phosphorylase Kinase; domain 1 10 97 - -
Pumo4g00922 427 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Pumo4g00922 427 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00922 427 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Pumo4g00922 427 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 412 - -
Pumo4g00922 427 Gene3D Kinase associated domain 1, KA1 293 417 - -
Pumo4g00922 427 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00922 427 SUPERFAMILY Protein kinase-like (PK-like) 15 314 IPR011009 -
Pumo4g00922 427 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00922 427 Gene3D Transferase(Phosphotransferase) domain 1 98 276 - -
Pumo4g00922 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Pumo4g00922 427 CDD CIPK_C 300 412 - -
Pumo4g00922 427 ProSiteProfiles NAF domain profile. 294 318 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00922 Pumo-Chr4 11959270 11961275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00922 7 418 CBL-interacting serine-threonine protein kinases AT4G30960 74.883 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pumo4g00922 Pkinase 5.4e-72 CL0016