Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00905 ATGGCTCTCCAATTTCGTACTGCTTATATCGCTCCATCTTCTCGTGTCTTTGGGCGTGGTGAGCTTGTGATAGATTCAGCACAGATAGCGAAGCGATACTTGCAGCGGTATTTCATCATTGATTTCCTATCTGTGTTGCCGATACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTAGCAACAAAGCAGGCCTTGTTGTTCATTATCTTGCTTCAGTATGTTCCTAGATTTCTCCGAATGGTACCGTTGACTTCAGAGCTTAAGAGAACAGCCGGTGTCTTTGCTGAAACTGCATGGGCAGGGGCTGCATATTATTTGCTGCTATACATGCTTGCCAGTCATATAGTTGGTGCTTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAAGGCTTGCAGTGACAACGGGTGCAATAAAAATTTCCTATATTGTGGGAACCAGCACATGGAAGGTTATAGTGCTTGGAATAAAACAAGTGAAGCTATTCTTAAGAAAAGGTGCTCTGCAGATGGTGATCCTGTGCCTTTTGATTATGGAATTTTTGAGCAAGTCTTGTCTTCTGGCATCATTTCATCTAAGAAGTTCATCTCCAAATACTGTTACTGTTTATGGTGGGGGCTACAGAATTTGAGTACACTTGGCCAGGGGCTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATAAGTGGCCTCATCCTTTTTGCGCTTCTGATTGGCAACATGCAGACATATCTTCAGTCTCTCACGATTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCACCATCGCTTACTCCCACAAGATCTTAGAGAGCGTGTGAGACGGTATGACCAATATAAGTGGCTGGCAACGCGTGGTGTAGATGAAGAAAATTTAGTTCAGAGTCTACCAAAGGATCTTCAGAGAGATATTAAGCGCCATCTCTGTTTGGCCTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAACCGTGTTTATTTACAGAGAATACTTACATTGTTCGGGAAGGAGATCCAGTTGATGAGATGCTGTTCATCATACGTGGTCGCCTTGAGAGTGTTACCACAGATGGTGGGAGGAGTGGATTTTTCAACCGCAGTTTTCTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTGGATCCCAAATCTGGTTCTAATCTCCCATCTTCTACTAGAACAGTTAAGGCATTAATGGAGGTTGAGGCTTTTGCCTTAACTGCTGATGAGTTAAAATTTGTTGCTAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACTTTCCGTTTTTACTCCCAACAATGGAGGACCTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCTAAAAAGAAAATTATGAAGCTTCGTCAAAAGGAAGAAGATGCTGATGAGTCAGAAGGAACTCATGAAAATGTTGGTGGCAGTTCCTACAGCTTTGGTGCTGCCTTGTTAGCCTCAAAGTTTGCTGCGCACACTCTTCGTGGTGTACATCGCAATCGACTTGCCAAGACTGCCAGGGAGTTAGTTAAACTACAGAAACCCCCTGAGCCTGACTTCTCTGCAGATGATGCTGACTAA 1710 0.4415 MALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLQRYFIIDFLSVLPIPQIVVWRFLQRSKGSDVLATKQALLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDSCWQKACSDNGCNKNFLYCGNQHMEGYSAWNKTSEAILKKRCSADGDPVPFDYGIFEQVLSSGIISSKKFISKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLATRGVDEENLVQSLPKDLQRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALMEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKIMKLRQKEEDADESEGTHENVGGSSYSFGAALLASKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFSADDAD 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00905 569 Pfam Cyclic nucleotide-binding domain 362 452 IPR000595 -
Pumo4g00905 569 PRINTS EAG/ELK/ERG potassium channel family signature 1 10 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo4g00905 569 PRINTS EAG/ELK/ERG potassium channel family signature 254 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo4g00905 569 PRINTS EAG/ELK/ERG potassium channel family signature 236 247 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo4g00905 569 PRINTS EAG/ELK/ERG potassium channel family signature 118 128 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo4g00905 569 PRINTS EAG/ELK/ERG potassium channel family signature 304 311 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo4g00905 569 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 563 - -
Pumo4g00905 569 ProSiteProfiles cAMP/cGMP binding motif profile. 341 425 IPR000595 -
Pumo4g00905 569 FunFam Cyclic nucleotide-gated ion channel 1 339 457 - -
Pumo4g00905 569 FunFam Cyclic nucleotide-gated ion channel 1 268 332 - -
Pumo4g00905 569 Gene3D Helix hairpin bin 269 332 - -
Pumo4g00905 569 SUPERFAMILY Voltage-gated potassium channels 28 263 - -
Pumo4g00905 569 Pfam Ion transport protein 1 267 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo4g00905 569 SUPERFAMILY cAMP-binding domain-like 270 461 IPR018490 -
Pumo4g00905 569 CDD CAP_ED 341 472 IPR000595 -
Pumo4g00905 569 SMART cnmp_10 341 472 IPR000595 -
Pumo4g00905 569 Gene3D - 1 266 - -
Pumo4g00905 569 Gene3D Jelly Rolls 339 459 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00905 Pumo-Chr4 11769180 11773987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00905 1 566 Ion Channels AT5G57940 82.074 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00905 K05391 - gmx:100784309 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00905 4 11769180 11773987 Pumo4g00905 4 11769180 11773987 ECH