Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00893 ATGCAGCAGAGTGATCAAACGGTGTTGAGCTTGAGGCCCGGTGGTGGAAGAGGCAGCAGGCTCCTCGCTCCTCGATTCGACTCCTCCTCCTCGACGTCTTCTGCTTCACCTGCTTTTGGCTCCTTTTCCGCTGATCTTCCTCTCCTGCGTCCCCATGGTGGAGCTCCCTCGCCCTTCTCTATCAAGGCTGGAGATGCACGGTTTGAGGGTCGTGAGCGTGTGCGATATACAAGGGAACAACTTTTACAGCTTAGAGAGGGTGTTGAGATCCTTGATGATGTTTTAAAGATCAAACAAGATATTGAAGCTGAACTTTTTGGTGAAGATCAAACTTGGGCCCGCTCAGAAAACAACCAGCCCTCACAGCAATTTCAAAATCGATATTCTGAGCCAGATAATCGTGACTGGCGTGGACGATCTGGCCAGCTTTCTGGTAATGCAGATGAGAGGTCTTGGGATAGTCTCAAGGAGAATAGGGAGTTTGGCAATACTAGTCAGATTAATCGTCAAGACCAACTGAACTCTCAGTTTGCAAGGGCACAAATCTCTTCTAACCAAGGGGGAGGACCTACTCCGACACTAGTCAAGGCTGAGGTGCCATGGTCAGCTAGAAGGGGAACTCTCTCTGACAAGGATCGTGTCTTAAAGACAGTTAAAGGAATACTAAATAAGTTGACTCCAGAGAAATTTGATCTCCTGAAGGGTCAGTTGATCGATTCTGGAATTACATCAGCCGACATATTGAAGGAAGTTATTTTGCTGATATTTGATAAGGCAGTGCTGGAACCAACGTTTTGCCCCATGTATGCTCAGCTGTGTTCTGATCTTAATGAAAAGCTGCCTCCATTCCCATCTGATGAGCCCGGTGGGAAAGAAATCACTTTTAAGCGAGTACTCTTGAATATTTGCCAGGAGGCTTTTGAAGGTGCAGATAAACTGAGGGAAGAAGTGAGACAGATGACTGCCCCTGACCAGGAGATGGAGCGACGGGACAAGGAAAGACTTGTCAAGATTCGAACCCTTGGAAACATCCGTTTAATTGGTGAGCTGTTGAAGCAAAAAATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGAGCTTTTAGGACCTCCAGACAGCAAGGTCTGTCCAGCTGAGGAAAATGTTGAAGCCATATGTCAATTTTTCAACACTATTGGTAAGCAGCTTGATGAAAGCCCAAAATCACGGCGTATAAATGATATGTACTTTAGCCGGTTGAAAGAATTGAGCACCAACCCCCAACTTGCACCACGGCTGCGGTTTATGGTTCGTGATGTTCTAGATTTGCGTTCTAATAACTGGATTCCAAGACGTGAAGAGGTGAAAGCCAAAACCATCACTGAAATTCATTCAGAGGCAGAAAAAAATCTTGGATTGCGTCCAGGTGCCACTGCAAGTATGAGAAATAACCGTGTAGTTTCTGGCGTTCAAGGAAATACCAGTCCAGGAGGATTCCCAGTTGCCCGACCCGGTACAGGTGGTTTGATGCCTGGGATGCCGGGGACCAGGAGGATGCCTGGGATGCCTGGAATTGATAATGACAACTGGGAGATGCCTAGGACAAGATCAATGCCGAGAGGAGACATGTCCAGCATGCAAACTGGAGGACGTGGCCAGTCTCCTTTCCTTTCAAAGACATCAACTGTTAACTCAAAGTTACTACCTCAAGGTAGTGGTGGTATTATAAGCGGGAGAAGCAGTGCCCTGGTGCATGGAAGTGCTCCTTCTGCTCGTCCGCCAAATGTTGGTTTTAGTGCTGAGCCCACACCTCAAATCCCTTCACCTGTTAAAGCTGTTTCTGCCATATCCTCTGAGAAGCCACAACCACAACCTCCAGCTGCAAAATTGAATACCGATGAACTTCAGCGTAAAACTGTTTCTCTTCTGGAAGAATATTTCAGTGTTCTGCTTTTGGACGAGGCATTACAGTGTGTGGAGGAACTTAAAGCTCCAGCTTATTACCCTGAGTTTGTCAAGGAAGCCATTTCCCTTGCACTAGATAAGAGTCCGCCATGCGTCGAACCTGTTGCCAATCTTTTGGAGTATCTGTTCATTAAGAAGCTTCTTTCAGCCAGAGACATAGGGACCGGGTGCATGTTATTTGCTTCTCTGCTGGATGATATCGGCATAGATTTACCTAAAGCACCAAACAATTTTGGTGAGATAATAGGGAAACTAGTTTTGGCCGGGGGTTTGGATTTTAAGGTGGTGAGAGAAGTCCTTAAGAAGGTGGAGGATGACCGGTTCCAGAAAACAATATTTTCTTCTGCGTTGCAGATAATTAGCTCTGCATCTGGGCAAGCTGTGTTGGATTCACAAGCATCTGATATTGAGGCCTGCCGGAGTCTGTTCAACTGA 2382 0.4647 MQQSDQTVLSLRPGGGRGSRLLAPRFDSSSSTSSASPAFGSFSADLPLLRPHGGAPSPFSIKAGDARFEGRERVRYTREQLLQLREGVEILDDVLKIKQDIEAELFGEDQTWARSENNQPSQQFQNRYSEPDNRDWRGRSGQLSGNADERSWDSLKENREFGNTSQINRQDQLNSQFARAQISSNQGGGPTPTLVKAEVPWSARRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVILLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADKLREEVRQMTAPDQEMERRDKERLVKIRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPPDSKVCPAEENVEAICQFFNTIGKQLDESPKSRRINDMYFSRLKELSTNPQLAPRLRFMVRDVLDLRSNNWIPRREEVKAKTITEIHSEAEKNLGLRPGATASMRNNRVVSGVQGNTSPGGFPVARPGTGGLMPGMPGTRRMPGMPGIDNDNWEMPRTRSMPRGDMSSMQTGGRGQSPFLSKTSTVNSKLLPQGSGGIISGRSSALVHGSAPSARPPNVGFSAEPTPQIPSPVKAVSAISSEKPQPQPPAAKLNTDELQRKTVSLLEEYFSVLLLDEALQCVEELKAPAYYPEFVKEAISLALDKSPPCVEPVANLLEYLFIKKLLSARDIGTGCMLFASLLDDIGIDLPKAPNNFGEIIGKLVLAGGLDFKVVREVLKKVEDDRFQKTIFSSALQIISSASGQAVLDSQASDIEACRSLFN 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00893 793 MobiDBLite consensus disorder prediction 1 37 - -
Pumo4g00893 793 Gene3D - 207 442 - -
Pumo4g00893 793 Gene3D - 622 787 - -
Pumo4g00893 793 FunFam Eukaryotic translation initiation factor isoform 4G-2 206 442 - -
Pumo4g00893 793 Pfam MA3 domain 629 741 IPR003891 -
Pumo4g00893 793 SMART if4_15 215 441 IPR003890 GO:0003723|GO:0005515
Pumo4g00893 793 ProSiteProfiles MI domain profile. 628 750 IPR003891 -
Pumo4g00893 793 SUPERFAMILY ARM repeat 623 780 IPR016024 -
Pumo4g00893 793 SUPERFAMILY ARM repeat 209 443 IPR016024 -
Pumo4g00893 793 Pfam MIF4G domain 215 441 IPR003890 GO:0003723|GO:0005515
Pumo4g00893 793 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 56 777 IPR045208 GO:0003743
Pumo4g00893 793 SMART ma3_7 629 741 IPR003891 -
Pumo4g00893 793 MobiDBLite consensus disorder prediction 111 151 - -
Pumo4g00893 793 MobiDBLite consensus disorder prediction 111 129 - -
Pumo4g00893 793 FunFam Eukaryotic translation initiation factor isoform 4G-2 622 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00893 Pumo-Chr4 11670312 11677008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00893 1 791 Eukaryotic Initiation Factors Gene Family AT5G57870 66.457 0.0 1016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00893 4 11670312 11677008 Pumo4g00893 4 11670312 11677008 ECH