Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00890 ATGGAAGCCAGCGCTGGACTGGTCGCTGGTTCTCACAATCGCAACGAGCTCGTTGTCATTCATGGCCATGAAGAGCCCAAGGCTTTGAAGAACTTGGATGGGCAGGTGTGTGAGATATGTGGCGATGATGTGGGACTTACGGTGGATGGAGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGCGTGCCGACCATGCTATGAGTATGAAAGAAGAGAAGGGAGACAAGTTTGTCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCGCGTGTTGAGGGAGATGATGACGAGGAAGACGTGGATGATATTGAACATGAATTCAACATCGATGACCAAATGAACAAGCATGACCATTCTGCTGAGGCCATGCTTCATGGGAAGATGAGCTACGGAAGAGGTCCTGAAGATGATGAGAATGCTCAATTCCCAGCTGTTATTGCTGGTGGTCGCTCTCGCCCTGTTAGTGGGGAGTTCCCAATAGCATCTCATTATGGGGATCAGATGTTAGCTTCTTCACTGCAAAACCGTGTTCACCCATATCCGGCGTCTGATCCTCGAAATGGAAAATGGGATGAAACCAAAGAGGATAGAGTGGATGACTGGAAGTTGCAACAAGGCAATTTGGGGCCTGAACCTGATGAAGATCCAGATGCAGCCATGTTAGATGAAGCAAGGCAACCACTGTCAAGGAAGGTACCAATAGCATCCAGCAAAGTGAATCCATATAGGATGGTGATCATGGCACGGCTTGTTATCCTTGCCTTCTTCCTGCGATATAGACTTATGAATCCTGTACATGATGCACTTGGGCTGTGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGATCGTCTTTCAATCAGGTATGAGCGTGAAGGTGAACCCAACATGCTTGCTCCTGTGGATGTCTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTTTGGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCATGTTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAAGCCCTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCATTCTGCAAGAAATTTTCTATAGAACCTAGAGCACCAGAGATGTACTTCAGTGAGAAAATTGACTATCTCAAGGACAAGGTGCAGCCCACATTTGTCAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTGGCAAAAGCTCAGAAGGTTCCTCAAGGAGGGTGGATTATGCAGGATGGGACACCATGGCCAGGAAACAATACCAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGATACTGAAGGAAACGAGCTTCCTCGTCTGGTTTATGTTTCTCGAGAGAAAAGGCCTGGATTCCAACACCACAAGAAAGCTGGTGCTATGAATGCTTTGATTCGCGTCTCCGCTGTGCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATGTCAATAACAGCAAGGCTGCTCGAGAGGCCATGCTTAACCAGGTGCTTCGTTGGGCACTTGGCTCCATTGAGATCTTCTTCAGTCGCCATTGCCCTTTATGGTATGGCTATAAGGAAGGGAAGCTGAAGTGGCTTGAGCGATTTGCCTATGCAAACACAACTATAAGCACTTTTGCTGGTTTGTACTTCGTTGCTCTATTCTCTTCAATCATTGCAACTGGCCTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTGTCAGCACACCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTTTGGCTGGAATTGACACCAACTTCACTGTTACATCTAAGGCAGCAGATGATGAAGAATTTGGAGAATTATATGCCTTTAAGTGGACTACTCTCCTGATTCCTCCAACCACTATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCCTGGGGACCTCTATTTGGAAAACTATTCTTTTCATTTTGGGTGATTGTCCATCTGTATCCATTCCTTAAGGGCTTGATGGGTCGCCAAAACCGCACACCCACCATAGTTGTTATATGGTCAGTACTATTGGCTTCCATTTTCTCCTTGCTTTGGGTAAGAATTGACCCATTTGTATTAAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTGA 2355 0.4527 MEASAGLVAGSHNRNELVVIHGHEEPKALKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQMNKHDHSAEAMLHGKMSYGRGPEDDENAQFPAVIAGGRSRPVSGEFPIASHYGDQMLASSLQNRVHPYPASDPRNGKWDETKEDRVDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKVNPYRMVIMARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYAFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00890 784 Pfam Cellulose synthase 591 778 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pumo4g00890 784 Pfam Cellulose synthase 326 548 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pumo4g00890 784 MobiDBLite consensus disorder prediction 189 206 - -
Pumo4g00890 784 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Pumo4g00890 784 FunFam Cellulose synthase 19 110 - -
Pumo4g00890 784 CDD mRING-HC-C4C4_CesA 35 85 - -
Pumo4g00890 784 MobiDBLite consensus disorder prediction 181 222 - -
Pumo4g00890 784 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Pumo4g00890 784 SUPERFAMILY RING/U-box 22 109 - -
Pumo4g00890 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Pumo4g00890 784 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 548 595 - -
Pumo4g00890 784 Coils Coil 424 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00890 Pumo-Chr4 11641973 11646971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00890 549 784 Cell Wall Biosynthesis AT5G17420 81.509 9.35e-142 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00890 K10999 - gmx:100779834 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00890 4 11641973 11646971 Pumo4g00890 4 11641973 11646971 ECH