Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00885 ATGATGTGTTTGTTGAGATTAACAGTGTTTCTATTTTTCTTTCTGGGCACTGTTCAATCTAGAGTACTTCGTGGGAAAGAAAATGCTGGCATCGTGAATGGAAAAAATTCACTTATTTCATTCATGTCAGGCATTGCTTCTGACCCTCAAAACGCTCTAGAGAGTTGGAAGTCACCGGGTGTTCATGTTTGTGATTGGTCAGGTGTAAGATGCAACAATGCAAGTGACATGATCATTGTGCTTGACCTAAGTGGAAGGTCACTAGGAGGCACGATTTCCCCTGCTCTTGCTAACATCTCTTCCTTGCAAATTCTTGATCTTTCTGGGAACTTTTTGGTGGGTCACATTCCAAAAGAACTAGGCCAATTGGTTCAGCTTGGAGAACTCAGTTTGTCTAGGAATTTTCTTGAAGGGCACATTCCATCCGAGTTTGGTTCACTTCACAACTTGTACTACCTTGACATGGGAAGCAATCATCTTGAGGGAGAGATTCCCCCATCACTTTTCTGTAATGGGACTTCACTGGATTATGTAGACCTCTCTAACAATTCCTTAGGGGGACAAATCCCCTTGAACAGTGAGTGTATCCTTAAAGGGCTCAGGTTCCTATTGCTTTGGTCTAACAAGCTTGTAGGCCAAGTTCCTTTAGCTCTTTCAAACTCTACCAAGCTTAAATGGCTTGATTTGGAGTTGAATATGTTGAGTGGAGAGCTTCCTTCTAAGATTGTAAGTAATTGGCCACAACTACAATTCCTCTACTTGTCACAGAACAATTTTACTAGCCATGATGGTAATACCAACCTTGAACCTTTCTTTGCCTCCTTGGTGAATTTATCACACTTTCAAGAACTCGAATTGGCGGGAAACAATCTTGGTGGGAAGCTGCCTCATAATATTGCTGATCTTCCCTCCAGCCTGCAACAACTTCACCTAGAAAAAAATCTTATATATGGCTCTATACCTCCACAAATTGGAAACCTTGTCAACTTGACTTTCTTGAAGTTGTCCAGTAACCTAATAAATGGATCAATCCCTCCCAGCCTCAGCCACATGAATAGGCTAGAAAGAATTTATTTGTCAAATAATTCACTATCTGGTGAGATTCCTTCAGCCCTTGGTGACATCAAGCATCTGGGACTTCTAGACTTGTCAAGAAACAAGCTTTCTGGTTCAATACCAGATAGTTTTGCAAATCTCTCCCAGTTAAGAAGGCTTTTACTTTATGACAACCAGCTTTCTGGAACAATCCCACCAAGTCTGGGAAAATGTGTCAATTTGGAGATTTTAGACTTATCTCACAACAAGATAACTGGGTTGATTCCTGCAGAAGTTGCAGCCCTGAGTAGCTTGAAACTATACTTGAATTTATCAAACAATAACTTACATGGGCCTTTACCATTAGAACTCAGCAAAATGGACATGGTGCTAGCTATTGACGTATCCATGAATAATCTCTGTGGCGGCATCCCTCCACAACTGGAAAGTTGCACAGCACTGGAGTACCTCAACCTCTCTGGTAATTCCTTTGAAGGCCCTCTCCCTTATTCGTTAGGCAAATTGCTCTATATTCGAGCACTTGATGTGTCTTCAAATCAATTGACTGGTAAAATACCAGAGTCCTTGCAGTTGTCTTCATCTCTCAAGGAACTTAATTTCTCATTTAACAAATTCTCAGGGAAAGTCTCAAACAAGGGAGCATTTTCAAATCTTACCATTGACTCTTTCCTGGGAAATGATGGTCTCTGTGGCCGGTTTAAAGGCATGCAACATTGTCACAAGAAACGTAGTTATCATTTGGTGTTCTTGTTGATTCCTGTGTTACTATTTGGTACCCCTCTACTATGCATGTGTTTTAGGTACTCAGTGGTAATCAAGTCAAAAGTGAGAGATCGATTTGCAATTGTTAGAAGAGGTGATTTGGAGGATGTAGAAGAGGTAACAAAAGACCACAAGTATCCAAGAATTTCATATGGACAACTTAGAGAAGCCACTGGAGGCTTCAGTGCTTCAAGCTTAATTGGTTCAGGCCGGTTTGGACAAGTCTACGAAGGAATGCTTCAAGATAATACAAGAGTAGCTGTGAAGGTGTTGGATACAACACATGGTGAGATTTCAAGGAGCTTTAGAAGGGAATATCAAATCCTGAAAAAGATAAGGCACAGAAATTTAATAAGGATCATCACAATTTGCTGTAGGCCAGAATTTAATGCCCTTGTTTTTCCCTTGATGCCAAATGGTAGCCTTGAGAGGCACCTATATCCAAGCCAAAAATTGGATGTGGTTCAATTAGTGAGAATCTGCAGTGATGTAGCTGAGGGAATGTCCTATCTGCACCATTACTCTCCAGTGAAAGTAGTGCATTGTGATCTTAAGCCAAGCAATATACTCCTGGATGAAGATCTGACAGCTTTGGTTACTGATTTTGGAATTTCAAGGCTTGTACAAAGTGATGAGAATACATCCACCAGTAGCTCACCATCTTTCAGTTCAACACATGGTTTGTTATGTGGCTCAGTTGGTTACATAGCTCCTGAATACGGAATGGGGAAACAAGCTTCAACCGAGGGTGATGTTTACAGTTTTGGAGTACTTGTGTTGGAGATGGTCTCAGGTAGACGCCCCACAGATGTTCTCAGCCATGAAGGCTCAAGCTTGTGTGAGTGGATTAAAAAACAATACACACACCCACACCACCTTCAAAACTTTGTTGAACAAGCACTGCAAAGGTGCTCTCCTTGTGGCGTGCCAAATAACCATCATAACAAAATTTGGAAAGATGTTATACTTGAACTCATTGAGGTGGGGCTGGTCTGCACACAGCACAATCCTTCAACAAGACCAAGCATGCACGATATAGCCCAAGAGATGGAGAGGTTGAAGGACTACCTCACTAAGTCAACCTTGCCCCCTCATCAATAG 2919 0.4152 MMCLLRLTVFLFFFLGTVQSRVLRGKENAGIVNGKNSLISFMSGIASDPQNALESWKSPGVHVCDWSGVRCNNASDMIIVLDLSGRSLGGTISPALANISSLQILDLSGNFLVGHIPKELGQLVQLGELSLSRNFLEGHIPSEFGSLHNLYYLDMGSNHLEGEIPPSLFCNGTSLDYVDLSNNSLGGQIPLNSECILKGLRFLLLWSNKLVGQVPLALSNSTKLKWLDLELNMLSGELPSKIVSNWPQLQFLYLSQNNFTSHDGNTNLEPFFASLVNLSHFQELELAGNNLGGKLPHNIADLPSSLQQLHLEKNLIYGSIPPQIGNLVNLTFLKLSSNLINGSIPPSLSHMNRLERIYLSNNSLSGEIPSALGDIKHLGLLDLSRNKLSGSIPDSFANLSQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKITGLIPAEVAALSSLKLYLNLSNNNLHGPLPLELSKMDMVLAIDVSMNNLCGGIPPQLESCTALEYLNLSGNSFEGPLPYSLGKLLYIRALDVSSNQLTGKIPESLQLSSSLKELNFSFNKFSGKVSNKGAFSNLTIDSFLGNDGLCGRFKGMQHCHKKRSYHLVFLLIPVLLFGTPLLCMCFRYSVVIKSKVRDRFAIVRRGDLEDVEEVTKDHKYPRISYGQLREATGGFSASSLIGSGRFGQVYEGMLQDNTRVAVKVLDTTHGEISRSFRREYQILKKIRHRNLIRIITICCRPEFNALVFPLMPNGSLERHLYPSQKLDVVQLVRICSDVAEGMSYLHHYSPVKVVHCDLKPSNILLDEDLTALVTDFGISRLVQSDENTSTSSSPSFSSTHGLLCGSVGYIAPEYGMGKQASTEGDVYSFGVLVLEMVSGRRPTDVLSHEGSSLCEWIKKQYTHPHHLQNFVEQALQRCSPCGVPNNHHNKIWKDVILELIEVGLVCTQHNPSTRPSMHDIAQEMERLKDYLTKSTLPPHQ 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00885 972 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 743 968 - -
Pumo4g00885 972 ProSiteProfiles Protein kinase domain profile. 667 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00885 972 Gene3D Ribonuclease Inhibitor 33 195 IPR032675 -
Pumo4g00885 972 Gene3D Ribonuclease Inhibitor 196 265 IPR032675 -
Pumo4g00885 972 Pfam Leucine Rich repeats (2 copies) 401 439 IPR025875 -
Pumo4g00885 972 Gene3D Ribonuclease Inhibitor 266 598 IPR032675 -
Pumo4g00885 972 SMART LRR_typ_2 375 398 IPR003591 -
Pumo4g00885 972 SMART LRR_typ_2 399 423 IPR003591 -
Pumo4g00885 972 SMART LRR_typ_2 424 446 IPR003591 -
Pumo4g00885 972 SMART LRR_typ_2 327 351 IPR003591 -
Pumo4g00885 972 SMART LRR_typ_2 147 171 IPR003591 -
Pumo4g00885 972 SMART LRR_typ_2 99 123 IPR003591 -
Pumo4g00885 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Pumo4g00885 972 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Pumo4g00885 972 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Pumo4g00885 972 SUPERFAMILY L domain-like 331 583 - -
Pumo4g00885 972 SUPERFAMILY RNI-like 81 365 - -
Pumo4g00885 972 CDD STKc_IRAK 673 959 - -
Pumo4g00885 972 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 32 190 - -
Pumo4g00885 972 SUPERFAMILY Protein kinase-like (PK-like) 648 956 IPR011009 -
Pumo4g00885 972 Pfam Protein kinase domain 669 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00885 972 ProSiteProfiles Leucine-rich repeat profile. 425 446 IPR001611 GO:0005515
Pumo4g00885 972 Pfam Leucine Rich Repeat 353 372 IPR001611 GO:0005515
Pumo4g00885 972 Pfam Leucine Rich Repeat 499 520 IPR001611 GO:0005515
Pumo4g00885 972 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 202 597 - -
Pumo4g00885 972 Gene3D Transferase(Phosphotransferase) domain 1 743 967 - -
Pumo4g00885 972 Gene3D Phosphorylase Kinase; domain 1 647 741 - -
Pumo4g00885 972 PANTHER OS04G0122200 PROTEIN 373 954 - -
Pumo4g00885 972 SMART serkin_6 667 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00885 Pumo-Chr4 11590303 11593970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00885 35 967 Receptor kinase-like Gene Family AT3G47570 34.272 9.56e-158 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pumo4g00885 Pkinase 4.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00885 - - gmx:100792446 1776.91