Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00874 ATGGCCAAAAAATCACAGCTGCGTGCCCAGAAAAACAATGCTAGCAATGACAATAATAATGTTAACGCAACCAACACTGTCGCCACCAAGGTGAAACGAACAAGGAGAAGTGTCCCTAGAGACTCCCCACCTCAACGCAGTTCAATATACCGAGGAGTCACTAGGCACCGGTGGACAGGCCGATACGAAGCTCATTTGTGGGACAAGCATTGCTGGAATGAATCACAGAACAAAAAAGGACGACAAGCTATTAAGTTGTATGCTATATATTTAGGCGCTTATGACAATGAAGAGGCGGCAGCACATGCTTATGATCTAGCAGCACTGAAATACTGGGGTCAAGATACTATTCTTAATTTTCCGTTATCAAACTACCTGAACGAACTGAAAGAAATGGAGGGTCAATCACGGGAGGAGTACATCGGATCGCTGAGGAGGAAAAGCAGTGGTTTCTCTCGGGGGATTTCTAAATACAGAGGTGTTGCAAGACATCATCATAACGGAAGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTCTATCTCGGAACTTACGCTACCCAAGAAGAAGCTGCTACGGCCTATGACCTGGCAGCAATAGAATACCGTGGACTCAATGCAGTGACCAATTTCGATCTCAGCCGTTACATTAAGTGGCTTAAGCCCAACAACATTAACAACATTAACAATGACCAGATTAGTATTAATCTCACTCACATAAACAATAATTGCACTAGCAACTTCACCCCAAACCCTGATCAAGAACAAGAAGTTAGCTTCTTCCACAACCAGGATTCAATCAATAATACTACTGTGGAAGAAGCCACGTTGGTGCCACATCAGCCTCGTCCAGCAAGTGCCACGTCAGCATTGGAGCTTCTACTTCAGTCATCCAAGTTCAAGGAGATGATGGAGATGACATCTGGGGCCAATCTTTCAACACAGCTGGAATCTGAGTTGCCACAGTGCACATTTCCTGATCACATTCAGACGTACTTTGAGTATGAAGATTCCAATAGATATGAGGAAGGGGATGATCTCATGTTCAAGTTCAACGAGTTCAGCTCCATTAATGTGCCGTTTTACCAATGTGACGAGTTCGAGAGTTGA 1119 0.4424 MAKKSQLRAQKNNASNDNNNVNATNTVATKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNESQNKKGRQAIKLYAIYLGAYDNEEAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMEGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNINNINNDQISINLTHINNNCTSNFTPNPDQEQEVSFFHNQDSINNTTVEEATLVPHQPRPASATSALELLLQSSKFKEMMEMTSGANLSTQLESELPQCTFPDHIQTYFEYEDSNRYEEGDDLMFKFNEFSSINVPFYQCDEFES 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00874 372 ProSiteProfiles AP2/ERF domain profile. 157 215 IPR001471 GO:0003700|GO:0006355
Pumo4g00874 372 CDD AP2 156 217 IPR001471 GO:0003700|GO:0006355
Pumo4g00874 372 SUPERFAMILY DNA-binding domain 156 217 IPR016177 GO:0003677
Pumo4g00874 372 FunFam AP2-like ethylene-responsive transcription factor 156 217 - -
Pumo4g00874 372 ProSiteProfiles AP2/ERF domain profile. 49 121 IPR001471 GO:0003700|GO:0006355
Pumo4g00874 372 FunFam AP2-like ethylene-responsive transcription factor 48 123 - -
Pumo4g00874 372 Coils Coil 4 24 - -
Pumo4g00874 372 SMART rav1_2 157 221 IPR001471 GO:0003700|GO:0006355
Pumo4g00874 372 SMART rav1_2 49 127 IPR001471 GO:0003700|GO:0006355
Pumo4g00874 372 MobiDBLite consensus disorder prediction 6 32 - -
Pumo4g00874 372 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 283 - -
Pumo4g00874 372 SUPERFAMILY DNA-binding domain 48 123 IPR016177 GO:0003677
Pumo4g00874 372 MobiDBLite consensus disorder prediction 1 48 - -
Pumo4g00874 372 Gene3D AP2/ERF domain 156 217 IPR036955 GO:0003700|GO:0006355
Pumo4g00874 372 Gene3D AP2/ERF domain 49 123 IPR036955 GO:0003700|GO:0006355
Pumo4g00874 372 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Pumo4g00874 372 PRINTS Ethylene responsive element binding protein signature 197 217 IPR001471 GO:0003700|GO:0006355
Pumo4g00874 372 Pfam AP2 domain 49 113 IPR001471 GO:0003700|GO:0006355
Pumo4g00874 372 Pfam AP2 domain 156 207 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00874 Pumo-Chr4 11491957 11494676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00874 45 219 AP2-EREBP Transcription Factor Family AT5G57390 70.286 3.48e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pumo4g00874 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00874 K09285 - gmx:100793339 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00874 4 11491957 11494676 Pumo4g00874 4 11491957 11494676 ECH