Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00871 ATGCTCAACAACACCCTCTGTCCCTGTTACATGATCATGGCTCTCCACTACCTCCTCCTCTTCTTCACTCTCTGTTCCGCTTCCCAGCCTCGCAACCCCGAAGTGGAGGTTTTGATGAGCATAAAAGCATGTCTCAATGACCCACACGGCGTCCTCAACAACTGGGATGAATACTCCGTCGACGCTTGCAGCTGGGCCATGATCACTTGCTCTTCTGATTACCTTGTCATAGGCCTCGGAGCGCCTAGCCAATCTCTCTCCGGAACTTTATCTCCAGCAATCGGAAACCTAACAAATCTTCGACAAGTATTACTGCAGAACAACAATATCTCAGGCAATATACCACCGGAACTTGGAAACCTTCCCAAGCTTCAGACACTAGACCTTTCCAATAACCGATTCTCAGGGGTGATTCCTGCATCTCTTAGTCAATTGAATAGTCTCCAGTACTTGAGGCTCAACAACAATAATTTGTCCGGATCCTTTCCCGTGTCACTGGCCAAAACCCCACAGCTTGCTTTCTTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAAGTTCCCAGCCAGGTCATTCAATATTGTGGGGAACCCATTAGTTTGTGGAAGCAGCACTACTGAAGGTTGCTCTGGGTCAGCAACCCTCATGCCCATTTCTTTCTCACAAGTGTCATCAGAAGGGAAACACAAATCCAAAAGACTAGCAATAGCACTTGGGATCAGTCTTAGTTGTGCTTCTCTCATCCTCCTGCTTTTTGGGCTATTTTGGTACAGAAAGAAACGACAGCACGGAGCCATCCTGTATATCAGTGATTATAAGGAAGAGGGAGTCCTTAGCTTGGGAAATCTCAAAAATTTCACTTTCAGAGAGCTCCAACATGCAACGGATAATTTCAGCTCAAAGAATATTCTTGGTGCTGGAGGCTTTGGCAATGTCTATAGGGGGAAGCTTGGAGACGGCACAATGGTGGCGGTGAAAAGGCTGAAAGATGTAAATGGTAGTGCTGGTGAATCACAGTTCCAGACAGAGTTGGAGATGATCAGCTTAGCAGTGCATCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTAATGAGAAACTTTTAGTTTATCCTTATATGTCTAATGGCAGTGTGGCCTCCAGGCTTAGAGGCAAACCAGCTTTAGATTGGAACACAAGAAAGAGAATAGCAATTGGAGCTGCCAGAGGCCTTCTGTATTTGCATGAGCAATGTGATCCAAAGATAATACACAGAGATGTAAAGGCCGCTAATGTGCTTCTAGATGACTATTGTGAGGCGGTTGTAGGTGATTTTGGCCTTGCAAAGCTCCTTGACCATGCTGATTCCCATGTCACTACTGCTGTCCGTGGCACTGTTGGGCACATTGCACCAGAGTACCTCTCCACTGGCCAATCATCTGAGAAAACAGATGTATTTGGATTTGGCATCCTCTTGTTAGAGCTCATAACCGGAATGACAGCACTCGAGTTTGGGAAAACTGTGAATCAAAAAGGTGCTATGCTAGAGTGGGTTAGGAAAATACTACATGAAAAGAGGGTTGCAGTGTTGGTGGACAAAGAGCTAGGAGACAATTATGATAGAATAGAGGTGGGGGAGATGCTGCAAGTTGCTTTACTGTGTACTCAATATGTGACAGCCCACCGCCCTAAAATGTCTGAAGTGGTTCGAATGCTTGAAGGTGATGGGCTTGCTGAGAAGTGGGCATCATCACATAATTACGGTAATCAAGACATGAACCCCAGCCACAGCAGCAGCAATAGCAATAGTTCATCCCGCCCTACCTCTGCTTCAAAACATGATGATGATGTTCATGACCGTTCCAGCATGTTTGGCATGACAATGGATGATGATGATGAACAGTCTTTGGAATCCTATGCAATGGAACTCTCTGGTCCTAGATAA 1935 0.4563 MLNNTLCPCYMIMALHYLLLFFTLCSASQPRNPEVEVLMSIKACLNDPHGVLNNWDEYSVDACSWAMITCSSDYLVIGLGAPSQSLSGTLSPAIGNLTNLRQVLLQNNNISGNIPPELGNLPKLQTLDLSNNRFSGVIPASLSQLNSLQYLRLNNNNLSGSFPVSLAKTPQLAFLDLSYNNLSGPLPKFPARSFNIVGNPLVCGSSTTEGCSGSATLMPISFSQVSSEGKHKSKRLAIALGISLSCASLILLLFGLFWYRKKRQHGAILYISDYKEEGVLSLGNLKNFTFRELQHATDNFSSKNILGAGGFGNVYRGKLGDGTMVAVKRLKDVNGSAGESQFQTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKILHEKRVAVLVDKELGDNYDRIEVGEMLQVALLCTQYVTAHRPKMSEVVRMLEGDGLAEKWASSHNYGNQDMNPSHSSSNSNSSSRPTSASKHDDDVHDRSSMFGMTMDDDDEQSLESYAMELSGPR 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00871 644 SMART serkin_6 300 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00871 644 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Pumo4g00871 644 SUPERFAMILY Protein kinase-like (PK-like) 282 570 IPR011009 -
Pumo4g00871 644 FunFam Somatic embryogenesis receptor kinase 1 270 376 - -
Pumo4g00871 644 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Pumo4g00871 644 Gene3D Transferase(Phosphotransferase) domain 1 377 587 - -
Pumo4g00871 644 SUPERFAMILY L domain-like 31 199 - -
Pumo4g00871 644 MobiDBLite consensus disorder prediction 580 605 - -
Pumo4g00871 644 FunFam Somatic embryogenesis receptor-like kinase 1 377 589 - -
Pumo4g00871 644 Pfam Protein kinase domain 301 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00871 644 MobiDBLite consensus disorder prediction 606 624 - -
Pumo4g00871 644 ProSiteProfiles Protein kinase domain profile. 300 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00871 644 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Pumo4g00871 644 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Pumo4g00871 644 Gene3D Phosphorylase Kinase; domain 1 270 376 - -
Pumo4g00871 644 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 17 579 - -
Pumo4g00871 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Pumo4g00871 644 MobiDBLite consensus disorder prediction 580 644 - -
Pumo4g00871 644 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00871 Pumo-Chr4 11440725 11446331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00871 2 644 Receptor kinase-like Gene Family AT5G16000 61.912 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pumo4g00871 Pkinase 2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00871 - - gmx:100797186 1155.2