Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00849 ATGGGCAGGAGTGATGTCTTTGTGCCTCCACCAGAACAGCCACCACCATATTTTCTCTCACAGCCAAACCCACCTTTTCCTCCCACTGTTCGATCTGATAGTTTCAGTTTGAACGATAGAGCCTTGAAGGTTAGTCCAAGCATCCTTCTCATCATAATAATTCTGGCTATTGTTTTCTTCATTTCTGGTTTGCTGCACCTGCTGGTTAGATTCCTGTGGAGACCCCAAACTAGAGAGCCTGATGATTTGGACAATGTCACTGCTCTCCAAGGCCAATTGCAGCAACTTTTTCATCTCCATGATGCTGGGGTTGACCAGTCCTTCATTGACACCCTCCCTGTGTTCCTCTACAAGGCCATCATAGGACTCAAGAACCCCTTTGACTGTGCCGTGTGTTTGTGTGAGTTTGAGCCTGAGGACAAGCTCAGGTTGCTGCCAAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCAGCTTGCTCCCTGAATTCTCTGCCAGCAACGCATGTTCTCCTATTGTTCTTGTCCTAGAATCTGGGAGTGAGAGCTCCAGGGAGATTGTTCCTGAAAGAGAGGCTGCTGTTGGAAGGACTAGTTCGGTTATGACCACAAATTCTCGCCTTGGTTGCCGTGGAGATAGTGAATTTGGATCAACCCGTGTGGATTTGAAATCAGGTGAGTTGTTAAGTGAAATTCCTGATCCAACAGTGCCAAGTGGTGTGGAAAAAGTGGTTACTGTTAAGCTGGGGAAGTTTAGAAGTGTGGATGGTGGTGGAGGTGAAGGTGGGGAAGGGAGTAGTAGTACCAACAATGTGGATGCTAGAAGGTGTTTTTCTATGGGGTCATTTGCTTATGTTATGGATGAGAGTTCCTCATTGCAAGTACCCATCAGAACCCCAATCAAGAAGCAATCAAGTAAGAAGAAGTCTGGTTTGCCTTTGATTCCAGGGCACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGGCTTTGATGCAACTACTATAGTTGAGGATGATGTTGCTAGTACTGGGGCTACAACTGCAAGTACAACTTGTAATGGGAACAGTGCTGCCATTGGAAGGAGCAGAAAGGAGAGCTTTTCTATATCAAAGATTTGGCTTAGGGGGAAGAAGGATAAGCCAAATGCTGTGGCGGATTCGTCTAGAAGGGCTGTTTCGTTTCGCTTCCCAGCCAAGTCTAGTGTTGTTGCCGCTTCTGGTAGTGCTGATGATGATTTGAAGGGCAAGAATTTCAAGTTTGATACAAGGAGTACTATTTCTGAGATGGACATTGGGAAGTGGGAAAATGGAGGAGGGAGTGAGTTCGATTATGATGAGGAAAACCAGAGTTGTTATAGTATGGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAATAATAAGGTTGTTCACTCTGCTTCCAACCTCTAG 1533 0.4599 MGRSDVFVPPPEQPPPYFLSQPNPPFPPTVRSDSFSLNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQTREPDDLDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPEFSASNACSPIVLVLESGSESSREIVPEREAAVGRTSSVMTTNSRLGCRGDSEFGSTRVDLKSGELLSEIPDPTVPSGVEKVVTVKLGKFRSVDGGGGEGGEGSSSTNNVDARRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLIPGHRPAMSECDCESRRDFKFAGFDATTIVEDDVASTGATTASTTCNGNSAAIGRSRKESFSISKIWLRGKKDKPNAVADSSRRAVSFRFPAKSSVVAASGSADDDLKGKNFKFDTRSTISEMDIGKWENGGGSEFDYDEENQSCYSMDSSQARAPSFARRTLLWLTGGRQNNKVVHSASNL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00849 510 CDD RING-H2_EL5-like 128 171 - -
Pumo4g00849 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 176 IPR013083 -
Pumo4g00849 510 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Pumo4g00849 510 FunFam RING-H2 finger protein ATL46 91 176 - -
Pumo4g00849 510 MobiDBLite consensus disorder prediction 314 337 - -
Pumo4g00849 510 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 43 395 - -
Pumo4g00849 510 MobiDBLite consensus disorder prediction 1 23 - -
Pumo4g00849 510 Pfam Ring finger domain 128 171 IPR001841 -
Pumo4g00849 510 SMART ring_2 129 170 IPR001841 -
Pumo4g00849 510 SUPERFAMILY RING/U-box 108 178 - -
Pumo4g00849 510 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00849 Pumo-Chr4 11163961 11165937 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00849 36 510 C3H Transcription Factor Family AT2G18650 46.029 6.83e-101 308
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00849 4 11163961 11165937 Pumo4g00849 4 11163961 11165937 ECH