Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00845 ATGCTATCAAGATCTTGCTTGGGGCTATTGAATTTGGTATCAGTGGATGATTACCAAGCGCTGGGTCGGGTGCCGCGGGTGGTGACGACGGTGGCCGGAGTCGTGCCGGAGTTAGAAATCAACGGCATGGCGAATTCGGGATCCGACGACGCCGTTTCGCCGGCGCCGCGCGAGCGGAGGATCGTGGTCGCGAATCAGTTACCGATACGCGCGTTTCGCGAGGGGAAGAAATGGAGGTTCGAGTGGGACAACGACAGCCTTGTCCTTCAGCTGAAAGACGGGTTCCCTTCCGATGTGGAAGTGTTGTACGTCGGTTCCTTGAAAGCAGAGATCGAACCCTGCGAACAAGACGAAGTGGCTCAGTTACTTCTGGAACGGTTCCGCTGCGTCCCAACGTTTATACCTTCAGAGGTTCACAACAAGTTCTATCACGGTTTTTGTAAGCATTACCTGTGGCCTTTGTTTCACTACATGCTTCCCATGTCGCCGAGCCAAGGCGCGCACTTCGACCGCGAGCAGTGGAAGGCTTATGTGCTCGCGAACAGGATCTTCGCCGACAAGGTCACCGAGGTTATCAACCCGGACGAGGATTATGTCTGGGTTCACGATTACCACCTCATGATATTGCCCACTTTTCTTCGGAAGCGGTTCCACCGCGTGAAGCTGGGGTTCTTCTTGCACAACACGTTTCCCTCATCGGAGATATACCGGACCCTGCCGGTGCGCGAGGACATTCTCCGCGCGTTTTTGAACTGCGATTTGATCGGGTTCCATACATTCGACTACGCGCGGCACTTTTTGTCGTGTTGTAGTAGGATGTTGGGGCTGGATTACGAGTCCAAGAGGGGTTACATTGGTTTGGATTACTACGGGCGCACCGTGACGGTTAAGATCCTCCCCGCGGGGATTCACATGGGGCTGTTGGAGTCGGTGTTGTCGTTGACGCAGACGGCGTTAAGGGTGAAGGAATTGAAGGAGGAGTTTGAAGGAAAGATTGTGATATTGGGAGTGGATGACATGGACTTGTTTAAAGGAATTAGTTTGAAGTTCTTGGCTTTGGGGAAGCTTCTGGAAGTGGATGAAAGTCTGCGGGGTCGTGTGGTGTTGGTTCAGATTCTGAACGCGGCGAGGAGCAGAGGGAAGGACATTCAGGACGTGAAGAACGAGAGCGAGGCCATTGCCAGAGAGATCAATGAGAAATATTCCCAACCGGGGTACCAGCCTATTGTTTACATCAATGGACCAATTTCCACGCAGGAGAAGGCTGCTTATTACGCTGTTTCTGAGTGTTGTGTTGTGAATGCGGTGAGGGATGGGATGAATTTGGTCCCTTATGAGTACACTGTTTGTAGGCAGGGGAGTGTTGCTTTGGATAAGGCGCTTGGGGTTGAAGGTGAGGATAAGAAGGCACTTAAACAGAGCGTTATCATTGTGTCTGAGTTCATAGGGTGTTCCCCTTCGCTCAGCGGAGCCATCAGGGTGAATCCGTGGAACATTGATGAAGTTGCTGAAGCTATGAATTCGGCTGTCACAATGTCGGAGGCGGAGAAGCATTTGCGCCATGAGAAGCATTATAAATACATAAGCTCGCATGATGTGGCTTACTGGGCTAGGAGTTTTGATCAAGATTTAGATAGAGCTTGTAGGGAGCATTACTCCAAGAGGTACTGGGGTGTTGGATTGGGCTTGGGGTTCAGAATTGTTGCTTTGGATCCTACCTTTAGGAAGCTCTCTGTGGATCACATTGCGTCTGCATATAGAGATACACATAGTCGGTTGATCCTTTTGGATTACGATGGCACCATGATGCCGCAGGCGTCAATAAACAAGACTCCAAGCAGGGAAGTTATTTCTGTCTTGAATTATTTATGCAGTGATCCTGAAAACATGGTGTTCATTGTGAGCGGCAGGGATAAGGATTGTTTGAGCGAGTGGTTTTCTCCGTGTGAGAAATTGGGTCTATCTGCGGAGCACGGCTACTTCACTAGGTGGAGTAAGGATTCTCCTTGGGAGACTTGCGGATTGACGACCGATTTTGAATGGAAAATGATTGCAGAACCTGTGATGGCGCTTTATACAGAAGCAACTGATGGTTCCTTCATTGAACATAAGGAAAGCGCAATGGTTTGGCACCATCAAGAAGCGGATCCTTATTTTGGATCATGCCAAGCGAAAGAGCTTCTTGATCACCTGGAGAGTGTGCTTGCCAATGAGCCAGTAGTGGTTATAAGGGGACAACATATAGTTGAAGTTAAACCTCAGGGTGTGAGCAAGGGTAAAGTGGTGGAAGACCTTATCTCAATCATGCGAAGTAAGGGAAAGTCACCAGATTTTCTACTGTGCATAGGAGATGATCGCTCAGATGAAGATATGTTTGAAAGCATTGCTCGTTCAGTGTCTAATCCAGCTCTTCCAACCATATCAAAAGTGTTTGCATGCACTGTTGGACAGAAACCAAGTATGGCTGAATACTATTTGGATGATACTAGTGAAGTAATCAAGTTGCTTGAAGGACTTGCAACCGCATCAGCACACCATCTGCGTCCATAA 2550 0.4914 MLSRSCLGLLNLVSVDDYQALGRVPRVVTTVAGVVPELEINGMANSGSDDAVSPAPRERRIVVANQLPIRAFREGKKWRFEWDNDSLVLQLKDGFPSDVEVLYVGSLKAEIEPCEQDEVAQLLLERFRCVPTFIPSEVHNKFYHGFCKHYLWPLFHYMLPMSPSQGAHFDREQWKAYVLANRIFADKVTEVINPDEDYVWVHDYHLMILPTFLRKRFHRVKLGFFLHNTFPSSEIYRTLPVREDILRAFLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTVKILPAGIHMGLLESVLSLTQTALRVKELKEEFEGKIVILGVDDMDLFKGISLKFLALGKLLEVDESLRGRVVLVQILNAARSRGKDIQDVKNESEAIAREINEKYSQPGYQPIVYINGPISTQEKAAYYAVSECCVVNAVRDGMNLVPYEYTVCRQGSVALDKALGVEGEDKKALKQSVIIVSEFIGCSPSLSGAIRVNPWNIDEVAEAMNSAVTMSEAEKHLRHEKHYKYISSHDVAYWARSFDQDLDRACREHYSKRYWGVGLGLGFRIVALDPTFRKLSVDHIASAYRDTHSRLILLDYDGTMMPQASINKTPSREVISVLNYLCSDPENMVFIVSGRDKDCLSEWFSPCEKLGLSAEHGYFTRWSKDSPWETCGLTTDFEWKMIAEPVMALYTEATDGSFIEHKESAMVWHHQEADPYFGSCQAKELLDHLESVLANEPVVVIRGQHIVEVKPQGVSKGKVVEDLISIMRSKGKSPDFLLCIGDDRSDEDMFESIARSVSNPALPTISKVFACTVGQKPSMAEYYLDDTSEVIKLLEGLATASAHHLRP 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00845 849 FunFam Alpha,alpha-trehalose-phosphate synthase 311 529 - -
Pumo4g00845 849 NCBIfam trehalose-phosphatase 591 840 IPR003337 GO:0003824|GO:0005992
Pumo4g00845 849 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 549 - -
Pumo4g00845 849 SUPERFAMILY HAD-like 592 840 IPR036412 -
Pumo4g00845 849 FunFam Trehalose-6-phosphate synthase 2 675 754 - -
Pumo4g00845 849 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 591 708 - -
Pumo4g00845 849 Gene3D Glycogen Phosphorylase B; 53 310 - -
Pumo4g00845 849 Gene3D Glycogen Phosphorylase B; 311 529 - -
Pumo4g00845 849 NCBIfam HAD-IIB family hydrolase 593 797 IPR006379 -
Pumo4g00845 849 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 53 841 IPR001830 GO:0003824|GO:0005992
Pumo4g00845 849 Pfam Glycosyltransferase family 20 59 545 IPR001830 GO:0003824|GO:0005992
Pumo4g00845 849 CDD GT20_TPS 59 544 IPR001830 GO:0003824|GO:0005992
Pumo4g00845 849 Gene3D - 591 707 IPR023214 -
Pumo4g00845 849 Gene3D - 721 848 IPR023214 -
Pumo4g00845 849 CDD HAD_TPP 593 834 - -
Pumo4g00845 849 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 721 848 - -
Pumo4g00845 849 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 309 - -
Pumo4g00845 849 Pfam Trehalose-phosphatase 595 830 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00845 Pumo-Chr4 11118433 11121888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00845 10 843 Trehalose Biosynthesis Gene Families AT2G18700 68.571 0.0 1200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00845 K16055 - gmx:100810498 1643.25