Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00838 ATGGCTAAGTGCTTCCCATTCCCTCTTTCTCGTTTTCTGATTTTTTTGCTTGTGCTGCTACAGTCACAAACAGGGAATGGGTCAAATGCAACACCGAAGTCCGAAGTGATCAAGTTGAGAGTTAGGGTACCCAACAAGGCTGGTTTCCGCCAATTTGTGAATGTAGTAGTTAGGGACCCTCATGAAGAAAATAAGTACGACGTATCTGGATATTGCATGGATGTTTTCAACGCCGTTGTAACCCGCTTACCTTTCAATGTTTCTCTACATGTTGAACCTTATGATATTAATTCAAGTGAGATTTCTGGAACATACGATGCACTTCTCCATCAGATCTCGACAAGGCTGTATGATGTTGTGGTAGGGGATGTAACAATCCTGGCCAACCGTTCGAATTTTGTAGATTTCACACTGCCATATACTGGATCGGGAGTTAAAATGTTAGTACCAGTTCAACATGGGAGACAACAAACCATGTGGATTTTTGTCAAACCCTTCAGCTGGAATCTTTGGCTGAGCATAGTCATCATCTCTACCTTCATAGGGGTTGCCATACTCATCATGGAAAGAAATGTAAATGCACTGCCTAATGATCAGGAGGGTTCGCCAAATCGAACAAAGCTTAGCCCTGCAACCATCTTATGGTTTCCAATTTCACAAGCCATTCTTCCAGAAATTTATGTACTAGCGTTCCCTTTGAACTCCAGTCTTACGACTTACTTTTCGAGGGCCATCTTGAATGTGACTGAAAGTGATTTAATGAAAGAAATTGAGGAAAAATATTTTGGGAAGAATGATGATATTGGAGGAGTAGACCCGTCTGCGCAAATGTCTTCTTCTAGTCTAAGTCTCAACTTTCATAGCTTTGCAGGGCTATTCTTGATTACGGGGATTTCTACTTTATTAGCGCTATTGGTCTCAGAAACTGTTATATGGCAAAGACCCATTTTGATGGCTAAAGCATACAGTCAGAGGTATTTGTTTCCCAGTACTCCACCTTCCACAGAAACACGCGTTCATCCAACTCAAGATTCAACACACGGAATAGAGGCCGTTTAA 1059 0.4164 MAKCFPFPLSRFLIFLLVLLQSQTGNGSNATPKSEVIKLRVRVPNKAGFRQFVNVVVRDPHEENKYDVSGYCMDVFNAVVTRLPFNVSLHVEPYDINSSEISGTYDALLHQISTRLYDVVVGDVTILANRSNFVDFTLPYTGSGVKMLVPVQHGRQQTMWIFVKPFSWNLWLSIVIISTFIGVAILIMERNVNALPNDQEGSPNRTKLSPATILWFPISQAILPEIYVLAFPLNSSLTTYFSRAILNVTESDLMKEIEEKYFGKNDDIGGVDPSAQMSSSSLSLNFHSFAGLFLITGISTLLALLVSETVIWQRPILMAKAYSQRYLFPSTPPSTETRVHPTQDSTHGIEAV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00838 352 FunFam Glutamate receptor 2.7 34 158 - -
Pumo4g00838 352 Pfam Ligated ion channel L-glutamate- and glycine-binding site 61 150 IPR019594 GO:0004970|GO:0016020
Pumo4g00838 352 Gene3D - 33 158 - -
Pumo4g00838 352 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 227 314 IPR015683 -
Pumo4g00838 352 SUPERFAMILY Periplasmic binding protein-like II 12 265 - -
Pumo4g00838 352 MobiDBLite consensus disorder prediction 332 352 - -
Pumo4g00838 352 Gene3D - 159 247 - -
Pumo4g00838 352 SMART GluR_14 38 264 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00838 Pumo-Chr4 11021517 11023537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00838 38 241 Ion Channels AT2G24720 38.049 2.61e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00838 K05387 - gmx:100807817 350.517