Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00836 ATGGCTAAGTGCTTCTCATCCCTTCTCTCTTGGATTCTGATTTTTTTGCTTGTGCTGCTACACACACAAACGGGGAATGGGTCAAATGCAACATCAAAATCGGAAGTGATCAAGCTGAGAGTAGGGGTACCCCTGAAAAATGGTTTCCCCCAATTCGTGAATGTAATTTGGGACTCTCATGAAAAAAAGTACAACGTATCTGGATATTGCATAGACGTTTTCTATGCTGTTGTAAACCTCTTACCTTTCAAGGTTTCTCTAGATATTCAACCTTATGCTGTTGAATCAAGTGACAGTTATGAAGCTGGATCATACGATTCACTTCTCAAACAAATCCCAACAAAGTATGATGCCGTGGTAGGGGATATAACAATCCTGGCCGACCGTTCAAACATCGTAGATTTCACACTGCCATATACAGGATCGGGATTTAAAATGCTGGTAACAGTTCAACATGGAAGGCACCAAACCATGTGGATTTTTGTCAAACCTTTCAGCTGGGATCTTTGGTTGAGCATAACCATCATCTCTACCTTCATAGGGGTTGCCATACTCATCATGGAAAGGAATGTAAATGCTCTTCCTGATCAGGAGGGTTCGCAAAATCGAACAAAGCTTAGCCCTGCAACCATCTTATGGTTTCCAATTTCTCAAGCCATTCTCCCTGAAAGCATTTCCCTTTAA 684 0.4167 MAKCFSSLLSWILIFLLVLLHTQTGNGSNATSKSEVIKLRVGVPLKNGFPQFVNVIWDSHEKKYNVSGYCIDVFYAVVNLLPFKVSLDIQPYAVESSDSYEAGSYDSLLKQIPTKYDAVVGDITILADRSNIVDFTLPYTGSGFKMLVTVQHGRHQTMWIFVKPFSWDLWLSITIISTFIGVAILIMERNVNALPDQEGSQNRTKLSPATILWFPISQAILPESISL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00836 227 SUPERFAMILY Periplasmic binding protein-like II 9 185 - -
Pumo4g00836 227 Pfam Ligated ion channel L-glutamate- and glycine-binding site 60 150 IPR019594 GO:0004970|GO:0016020
Pumo4g00836 227 FunFam Glutamate receptor 2.7 34 157 - -
Pumo4g00836 227 SMART GluR_14 38 216 IPR001320 GO:0015276|GO:0016020
Pumo4g00836 227 Gene3D - 158 221 - -
Pumo4g00836 227 Gene3D - 32 157 - -
Pumo4g00836 227 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 217 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00836 Pumo-Chr4 11003155 11004870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00836 38 221 Ion Channels AT2G24710 37.838 7.36e-33 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00836 K05387 - gmx:100811144 387.497