Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00832 ATGGTACTTCCCTCCCCTTCAAAAATACTAGTTGGCCTCTCCTTAGACCCAGATGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGTTCTAGCCAATCCAAATGACACCATTGTGGCCGTGCATGTTCTTGTTGCTGCGGATAAGAAGAAGCGTGTCTCAGTCAGAAGAAGGCAATCACAACTCAGGCAGGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAGACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCCAGGGTGGCACTCAATTCCTCAGTTGGTGAAGGTTTAGTGGAGGAAGCCAAGTCCATCAATGCTGACTTTCTTCTTATCCGTGGCTCAAGAAACCGAACAAATAAAATTGGAACTTCTAAAGGAATTACCAAGTATTGCTTTGAGCATGCACATGAAGGGTGTACAATGGTCTCAGTTGGAAGACGTACAAAGACAGATCAAAGTGCCAATTCAAACTCAACACGTTTTCAAGCAGATAAAAAACAACCAAGTTCAAGATGGTTTAAGAAGGATAACCAATGTGACAAGGGTGCCTCCCCTGTTCTGGAGGATTATATCTCAGGAAACAAGGCTCAGAACCGTTCACCAAGAACAGTACTAGATGGTCTAGAGGGACAATCGAACAGCACTGAAGATGATACCTTTAGCACCAGGGTCTCAGGCACCACGTATACCCCATCATCGGATTCTAAGTTTAAGAGCCGATCCAAGATAAGAAAACCACAGTTCCCATTCTGGTTCATAGTCTCATTCCTTGCTTCACCATTTAGAAGGAAAAACTTTAACATATCCAAAAATGAAAAGCGTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAGATATCCAATGCTACCAAAGACTTCCACCAAGATAATTTGGTTGGACGAGGTGGGTACTCGGAAGTATACAAAGGTGATCTTTCAGATGGACGAACCATTGCTGTGAAGAGGCTGGCCAAGGACAACAAAGATCCTAACAAGGAAAAAGAGTTCCTTATGGAATTGGGTGTTATTGGACATGTCTGCCATCCTAATACTGCAACATTAGTGGGCTGCTGCATTGAAAATGGGCTATATCTGATTTTCAATTACTCCCAAAATGGAAATTTGGCAACTGCATTGCATGGTAAAGGAGGAGATTCACCAGACTGGCCAATCAGATACAAAATTGCCATTGGTGTTGCAAGGGGTCTCCATTATCTTCATAAATGTTGCAAACACAGAATAATTCACCGTGACATTAAAGCCTCTAATGTTCTTCTGGGTCCTGACTATGAACCACAGATTACCGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTGATCCCCGTAGAGGGCACTTTTGGATACTTAGCGCCAGAGTACTTTATGCATGGAATCGTGGATGAGAAAACAGATGTTTTTGCATTTGGAATTCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCAAAGCAAAACCTTCTCCTATGGGCAAAGCCTCTAATGGAATCAGGGAATATTGCTGAGCTAGCTGATCCAAGATTGGAAGGTAAATATGATGGAGAGCAACTGTATAGGGTAGTGCTAACCGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGCGAGGTGTTAGAGCTGCTAACCAGTGGCCAAGAGAGTGAGAATGGAAAGAGCTGGAGAATCCCAAAGTTCACCTCTGATGAATTGAATGATTACTCTATGGTTTTCGGATATGATGCACCCTCAGACATATCTTTGGAGGATTATTTGTGA 1824 0.4337 MVLPSPSKILVGLSLDPDDSKELLSWAIRVLANPNDTIVAVHVLVAADKKKRVSVRRRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEARVALNSSVGEGLVEEAKSINADFLLIRGSRNRTNKIGTSKGITKYCFEHAHEGCTMVSVGRRTKTDQSANSNSTRFQADKKQPSSRWFKKDNQCDKGASPVLEDYISGNKAQNRSPRTVLDGLEGQSNSTEDDTFSTRVSGTTYTPSSDSKFKSRSKIRKPQFPFWFIVSFLASPFRRKNFNISKNEKRQPLLKCFSYEQISNATKDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLIFNYSQNGNLATALHGKGGDSPDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIAELADPRLEGKYDGEQLYRVVLTASYCVRQTATWRPPMSEVLELLTSGQESENGKSWRIPKFTSDELNDYSMVFGYDAPSDISLEDYL 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00832 607 Pfam Universal stress protein family 8 142 IPR006016 -
Pumo4g00832 607 CDD USP_Like 8 140 - -
Pumo4g00832 607 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 374 578 - -
Pumo4g00832 607 FunFam Putative receptor-like serine/threonine-protein kinase 264 373 - -
Pumo4g00832 607 Gene3D Transferase(Phosphotransferase) domain 1 375 583 - -
Pumo4g00832 607 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Pumo4g00832 607 PANTHER OS08G0249100 PROTEIN 59 577 IPR046958 -
Pumo4g00832 607 MobiDBLite consensus disorder prediction 152 179 - -
Pumo4g00832 607 MobiDBLite consensus disorder prediction 195 244 - -
Pumo4g00832 607 Gene3D Phosphorylase Kinase; domain 1 261 373 - -
Pumo4g00832 607 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 122 - -
Pumo4g00832 607 Pfam Protein kinase domain 297 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00832 607 SMART serkin_6 297 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00832 607 SUPERFAMILY Protein kinase-like (PK-like) 271 564 IPR011009 -
Pumo4g00832 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Pumo4g00832 607 Gene3D HUPs 4 149 IPR014729 -
Pumo4g00832 607 ProSiteProfiles Protein kinase domain profile. 297 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00832 607 MobiDBLite consensus disorder prediction 152 170 - -
Pumo4g00832 607 FunFam Putative receptor-like serine/threonine-protein kinase 2 148 - -
Pumo4g00832 607 MobiDBLite consensus disorder prediction 195 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00832 Pumo-Chr4 10931452 10935210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00832 285 603 Trihelix Transcription Factor Family AT1G70460 39.763 3.75e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pumo4g00832 Pkinase 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00832 - - gmx:100782832 1144.03