Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00831 ATGGGAATTGAAAGAGGAGGCTTGAAGGGGTTCAGGAGCGGCTGGAGCGTGCCGCCGAAGCCATGTGACTCCTGCAAGCTGGCTTCGGCGGCGCTTTTCTGCCGCCCCGATTCCGCGTTTCTCTGTATCGCTTGCGACTCTAAGATTCACTGCGCGAATAAGCTCGCGTCGCGCCACGAGCGCGTGTGGATGTGCGAGGTGTGCGAGCAGGCACCTGCTGCTGTCACGTGCAAGGCTGACGCGGCCGCCCTCTGCGTCACGTGCGACTCCGACATCCACTCCGCGAACCCGCTCGCGCGCCGCCACGAGCGTGTCGCCGTGGAGCCCTTCTTCGACTCCGCGGAGTCCATTGTGAAAGCCTCCGCCGCCGCCTCCTTCGGGTTCATCGTCCCCTCCGACGACGCCGCCGCCTCAGACGCCTTCGCCCCTGACGACTCCGACGCCGCCGCCTGGCTCATCCCGAACCCCAATTTCGGGTCCAAACTCATGGATGCCCCCAACATCAAGTCCAAGGAGATGTTCTTCTCCGAAATGGACCCTTTTCTCGATTTCGATTACTCAAACTCCTTCCAAAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCAGTTCAAACCAAACCCTCCCTCGCCCCTCCCCTCATCAACAGTCACCACCAATCAGAGACTTGCTTCGACATCGATTTTTGCCGATCGAAGCTCTCCTCCTTTAACTACCCATCCCAGTCTCTTAGCCAAAGCGTTTCGTCGTCGTCGCTTGATGTTGGAGTGGTGCCAGATGGGAACACGGTGTCGGACATGTCGTACTCGTTTGGTCGGAACAGTTCGGATTCGAGTGGGATTGTGGTGTCGGGGGGAAGTGGTGGACAAGGTGCGACGCAGTTGTGTGGGATGGATCGCGAAGCGAGGGTGCTGCGATACAGAGAGAAAAGGAAGAACCGAAAATTCGAGAAGACTATTCGATACGCATCGCGAAAGGCTTATGCGGAAACCCGGCCCAGGATAAAAGGCCGGTTCGCGAAACGAACCGAAATTGACTCGGATGTGGAGCGTCTCTATAGCCCCGCCGCTGCGGCACTCATGCTGGACACTCCATACGGCGTCGTACCATCGTTTTAG 1119 0.5853 MGIERGGLKGFRSGWSVPPKPCDSCKLASAALFCRPDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLARRHERVAVEPFFDSAESIVKASAAASFGFIVPSDDAAASDAFAPDDSDAAAWLIPNPNFGSKLMDAPNIKSKEMFFSEMDPFLDFDYSNSFQNNNSAGNDSVVPVQTKPSLAPPLINSHHQSETCFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSDMSYSFGRNSSDSSGIVVSGGSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPAAAALMLDTPYGVVPSF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00831 372 CDD Bbox1_BBX-like 65 107 - -
Pumo4g00831 372 CDD Bbox1_BBX-like 21 64 - -
Pumo4g00831 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 358 IPR045281 GO:0009909
Pumo4g00831 372 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Pumo4g00831 372 SMART bboxneu5 65 107 IPR000315 GO:0008270
Pumo4g00831 372 SMART bboxneu5 17 64 IPR000315 GO:0008270
Pumo4g00831 372 Pfam CCT motif 300 342 IPR010402 GO:0005515
Pumo4g00831 372 Pfam B-box zinc finger 62 106 IPR000315 GO:0008270
Pumo4g00831 372 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Pumo4g00831 372 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00831 Pumo-Chr4 10919988 10922110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00831 1 372 C2C2-CO-like Transcription Factor Family AT5G57660 56.545 3.76e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pumo4g00831 zf-B_box 3.3e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00831 4 10919988 10922110 Pumo4g00831 4 10919988 10922110 ECH