Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00827 ATGGGGTTTGAAAAAAAAATTGGGAAGTATCAGCTTGTTAGGACTATTGGAGAAGGTACATTCTCTAAGGTTAAGCTGGCTGTCAATGGCAACAATGGTCAGAAGGTTGCTGTCAAGGTTAAAAGAGAGATCAGAACAATGAAAATTCTCCATCATCCAAATATAGTTAGAATTCACGAGGTTATTGGCACAAAAACGAAGATATACATTGTGATGGAGTATGTTTCAGGAGGACAGCTATTAGACAAGATGTCCTATGGAGAGAAGTTGAATGAATGTGAGGCAAGAAAACTATTCCAGCAACTTATCGATGCCCTGGACTACTGCCATAACAAAGGCGTTTATCATCGAGATCTCAAGCTAGAAAACTTGCTTCTTGACAGCAAGGGAAATCTCAAAGTGTCTGATTTTGGATTAAGTGCATTGCAAAAGCGTAACGACGTCTTAACCACGCGGTGTGGATCCCCATGCTATGTGGCACCTGAGCTGCTATTGAGCAAGGGGTATGATGGAGCAGCTGCTGATGTTTGGTCATGTGGGGTGATCCTTTTTGAATTACTTGCAGGCTATTTACCATTTAACGACCGGAACTTGATGAACTTATATGGAAAGATATGGAAAGCAGAATATAGATGTCCCCCATGGTTTACTCAGAGTCAAAAGAAACTAATTGCCAAAATACTTGAACCACGTCCTGTAAAGCGGATAACTATACCAGATATTGTTGAAGATGAGTGGTTTCAAACAGATTACAACCCTGCTTGTGCATCTGAATTTGATCTGAACATTAACCTGGATGATGTCGATGTTGCTTTCAATTCAATTGAGGAGAATATCAGAGAGTCAACGATACCTAAGTCCTCAAGTTTCATTAATGCGTTTCAACTAATAGCCATGTCTCAGGACCTTGATCTATCTGGCCTTTTTGAAGAACAGGATGAAAAAAAGCAGAGAACAAGGTTGGGATCCAAACACACTATCAATGAAACAATAGAAAAAATAGAAACTGCTGCAACAGATGTAAGACTGTCAGTAGAGAAGATGAACAACTTTAAGATAAAAATACAACCGAAACAGATAATGACTAGGTGTTCTAGATCATACCTATCAGCCCAGGTGATTGAAGTTGCTCCAACTCATTGTGTTGTAGAAATATCAAAATCTACAGGAGATCTTAGAGTGTACAATAAATTTTGTGAAAGTTTATCAAATCTGCTGAAACAAAAACCTGCTGCGCCATCACAAAGCCAAGATTCTGTAGATCTATGTGCCGGTGATAGAAAAAAACAGGATGCTGGATGCTATGAAGAGCCAAAAAGTGAAGATAGTAAACTTCTTCGTGGCTATAAATCTGCTTGA 1359 0.3907 MGFEKKIGKYQLVRTIGEGTFSKVKLAVNGNNGQKVAVKVKREIRTMKILHHPNIVRIHEVIGTKTKIYIVMEYVSGGQLLDKMSYGEKLNECEARKLFQQLIDALDYCHNKGVYHRDLKLENLLLDSKGNLKVSDFGLSALQKRNDVLTTRCGSPCYVAPELLLSKGYDGAAADVWSCGVILFELLAGYLPFNDRNLMNLYGKIWKAEYRCPPWFTQSQKKLIAKILEPRPVKRITIPDIVEDEWFQTDYNPACASEFDLNINLDDVDVAFNSIEENIRESTIPKSSSFINAFQLIAMSQDLDLSGLFEEQDEKKQRTRLGSKHTINETIEKIETAATDVRLSVEKMNNFKIKIQPKQIMTRCSRSYLSAQVIEVAPTHCVVEISKSTGDLRVYNKFCESLSNLLKQKPAAPSQSQDSVDLCAGDRKKQDAGCYEEPKSEDSKLLRGYKSA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00827 452 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 401 - -
Pumo4g00827 452 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Pumo4g00827 452 FunFam Non-specific serine/threonine protein kinase 286 409 - -
Pumo4g00827 452 SMART serkin_6 10 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00827 452 Gene3D Kinase associated domain 1, KA1 286 408 - -
Pumo4g00827 452 Pfam NAF domain 289 347 IPR004041 GO:0007165
Pumo4g00827 452 SUPERFAMILY Protein kinase-like (PK-like) 7 248 IPR011009 -
Pumo4g00827 452 Gene3D Phosphorylase Kinase; domain 1 41 76 - -
Pumo4g00827 452 Gene3D Phosphorylase Kinase; domain 1 2 40 - -
Pumo4g00827 452 ProSiteProfiles NAF domain profile. 286 310 IPR018451 GO:0007165
Pumo4g00827 452 ProSiteProfiles Protein kinase domain profile. 10 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00827 452 MobiDBLite consensus disorder prediction 427 452 - -
Pumo4g00827 452 Gene3D Transferase(Phosphotransferase) domain 1 77 268 - -
Pumo4g00827 452 CDD CIPK_C 292 408 - -
Pumo4g00827 452 FunFam Non-specific serine/threonine protein kinase 3 287 - -
Pumo4g00827 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 114 126 IPR008271 GO:0004672|GO:0006468
Pumo4g00827 452 Pfam Protein kinase domain 10 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00827 Pumo-Chr4 10828728 10831653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00827 72 406 CBL-interacting serine-threonine protein kinases AT5G57630 61.721 8.72e-147 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pumo4g00827 Pkinase 6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00827 - - gmx:100786097 836.254