Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00822 ATGGGAAGAGCTCCATGCTGTGACAAGGCCAGCGTGAAGAAAGGACCATGGTCTCCTGAAGAGGATGCTGCACTTAAAGCCTACATTGAAAAGAATGGAACTGGTGGCAATTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAATATCAAGCATGGTGGATTTACTGAAGAAGAAGACAACATCATCTGCAGCCTTTACATTAGCATTGGAAGCAGGTGGTCCATAATTGCTGCTCAGTTACCTGGAAGGACAGATAACGACATCAAGAACTATTGGAACACTAAATTGAAGAAGAAACTGCTTGGGAGGCGCAAACAATCTAACTTGAGCGCAAAAGACACAAATAATGGAATAGAGGAGAATTCTTATTCAAATGCCCTAAGCAGTTCAGCTCTTGAAAGACTCCAACTGCACATGCAACTTCAAAGCCTTCAAAACCCTTTCTCTTTCTACAATAACCCTGCGCTGTGGCCTAAGTTGCATCCTTTCCAAGAAAAGATGATTCAAAGCCTGCAATCTTTGAATGATGGCTCTAACCCTGTGATGCAAAATGCTTTGCCTTCCCCACATGTCGAACAAGGACAAAAGGATGAGTTCTACAAGCCTCAACATGATGGTGCAAAGATCAATAACCCACAGGTTCATCTTTTGGAGAATATTCCTTTGAGTAACAGTGGAGTTCCCTTTGTTGCTTCTGGGAGTAATAATAATCCAATGCACTCAAGTCTTGCACCAAGAGCTGAGGCTGTTGAGCAGACTAATAGTGTGGGATTTCAGCAACTTGGTGCACTGCAAACTGAACTAGATGACATTCTCAACAACAGAACAATGGGTTATGTGCCACAGGAAGATCATGATATGGCTGGATTTGATTGTTTCAGAGAGATGAATGGCTCAAAGGACAGCTTGATTTGGTGGTCCAATGATTCTGATACCAAATCAGCATCCTCAAATTCCTGGGATTCATCTACTACTCCAGCTCTTCTAACACAAGGGATGTTCCAAGATTATGAACTGGGTTACAATCTGTAG 1083 0.4247 MGRAPCCDKASVKKGPWSPEEDAALKAYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGRRKQSNLSAKDTNNGIEENSYSNALSSSALERLQLHMQLQSLQNPFSFYNNPALWPKLHPFQEKMIQSLQSLNDGSNPVMQNALPSPHVEQGQKDEFYKPQHDGAKINNPQVHLLENIPLSNSGVPFVASGSNNNPMHSSLAPRAEAVEQTNSVGFQQLGALQTELDDILNNRTMGYVPQEDHDMAGFDCFREMNGSKDSLIWWSNDSDTKSASSNSWDSSTTPALLTQGMFQDYELGYNL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00822 360 CDD SANT 71 113 IPR001005 -
Pumo4g00822 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pumo4g00822 360 PANTHER OS09G0431300 PROTEIN 1 343 - -
Pumo4g00822 360 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pumo4g00822 360 Gene3D - 70 143 - -
Pumo4g00822 360 FunFam Transcription factor MYB36 70 139 - -
Pumo4g00822 360 CDD SANT 16 62 IPR001005 -
Pumo4g00822 360 Gene3D - 7 68 - -
Pumo4g00822 360 SMART sant 13 64 IPR001005 -
Pumo4g00822 360 SMART sant 67 115 IPR001005 -
Pumo4g00822 360 FunFam Transcription factor RAX3 7 68 - -
Pumo4g00822 360 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pumo4g00822 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pumo4g00822 360 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pumo4g00822 360 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pumo4g00822 360 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00822 Pumo-Chr4 10798317 10799747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00822 1 199 MYB Transcription Factor Family AT5G57620 74.757 4.78e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g00822 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00822 K09422 - gmx:778083 674.085