Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00806 ATGGCCATGAATTTCCACAACCCCAATACTTCTCTTCATCACCTAAGCCAACCAGATGATGAGATCAATCATCTCAACCTAGATCTTCTTCTTGAGCCTTCTTCTTCTTCTTCATCTTCACCTATTAGTCCTATTGAGCCGCGGATATTCTCATGCAACTATTGCCAGAGAAAGTTCTATAGCTCTCAAGCGCTAGGGGGTCACCAAAATGCTCACAAGCTTGAAAGGACACTGGCCAAGAAGAGCAGGGAACTGAGTTCAGCCATGCAATCATCTTATGGAGCACCAGAGCAAAGATCAAACTTCAGTGCTGGTCGTGCTCTTGGGGTTGTGGATAACCAAGGACAAAGTTTTGTGAGGCTTGGTGGAAGAAAAGAGTTCAGTTATGGTTCCAAGGAAGGGGTGGCTTCCAGTTCCTGGTCAAGGGGTTATAGTACTTCTGAACATGTTCAGGAGGATATTGGCCAACTTGACTTGTCGTTAAGGCTTTGA 492 0.4533 MAMNFHNPNTSLHHLSQPDDEINHLNLDLLLEPSSSSSSSPISPIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSAMQSSYGAPEQRSNFSAGRALGVVDNQGQSFVRLGGRKEFSYGSKEGVASSSWSRGYSTSEHVQEDIGQLDLSLRL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00806 163 Coils Coil 71 91 - -
Pumo4g00806 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Pumo4g00806 163 MobiDBLite consensus disorder prediction 132 151 - -
Pumo4g00806 163 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Pumo4g00806 163 Gene3D Classic Zinc Finger 35 104 - -
Pumo4g00806 163 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 97 IPR044246 GO:0009788
Pumo4g00806 163 MobiDBLite consensus disorder prediction 130 151 - -
Pumo4g00806 163 SUPERFAMILY beta-beta-alpha zinc fingers 47 77 IPR036236 -
Pumo4g00806 163 FunFam Zinc finger protein 2 30 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00806 Pumo-Chr4 10570494 10571759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00806 6 163 C2H2 Transcription Factor Family AT5G57520 49.390 4.31e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g00806 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00806 - - gmx:100778014 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00806 4 10570494 10571759 Pumo4g00806 4 10570494 10571759 ECH