Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00805 ATGCATACATGCTGGCACCACCTTCAAGCAAACTCGCAAATCTTCCTACTCCAACAAAAAATGGCACCTCCACCACAAGAATTCATCTTCCGGTCCCCACTCCCCGACATTCCCATTCCCACACACCTCCCATTGTACTCTTACTGCTTCCAAAACTTGTCACAGTTCCAAAACCGTCCATGCCTCATCGACGGCGACACCGGCGAGACCCTCACCTACGCCGACGTCGATCTCGCCGCTCGCCGCATCGCCGCCGGCCTCCACAAAATCGGCATCCGCCAGGGTGACGTCGTCATGCTCGTCCTCCGCAACTGCCCCCAGTTCGCCCTAGCCTTCCTCGGCGCCTCCCGCCGCGGCGCCGTCGTCACCACCGCCAACCCCTTCTACACTCCGACGGAGCTCGCAAAACAGGCCACGGCGACAAAAGCCAGGCTCGTCATAACGCAATCCGCGTACGTTGAAAAAATCAAGAGCTTCGCGGAGAGCAACGATGTCATGGTCATGTGCATTGATGATTATGCTTCGGAAAACGACGACGTTTTGCATTTCTCAACGCTCACTAACGCCGATGAAACGGAAGCCCCTGCCGTTAAGATTGACCCGGACGACCTCGTTGCGCTTCCGTTTTCTTCTGGCACGTCGGGGCTCCCGAAGGGCGTTATGTTATCGCATAAAAACTTGGTCACCACGATAGCGCAGTTAGTTGACGGCGAAAACCCGCACCAGTACACGCACAGCGAGGATGTGTTACTCTGTGTGCTGCCTATGTTTCATATCTATGCGCTCAATTCTATTTTGCTCTGCGGGATTCGATCCGGTGCGGCTGTGCTTATTGTGCAGAAGTTTGAGATCACCACACTGTTGGAGCTCATCGAGAAGTACAAGGTTACCGTTGCGTCGTTTGTGCCGCCCATCGTTTTGGCGTTGGTTAAGAGCGGAGAGGCTCACCGATACGACCTGTCGTCTATTCGAGCTGTTGTCACCGGCGCGGCACCGTTGGGAGGGGAACTCCAAGATGCCATCAAGGCTAGGCTACCACACGCTACTTTTGGACAGGGATATGGGATGACAGAAGCAGGACCACTTACCATTAGCATGGCATTTGCAAAAGAACCCTCTAAGATAAAATCAGGTGCATGCGGAACTGTTGTGAGAAACGCCGAATTGAAAATCGTGGATACAGAAACGGGTGCTTCACTTCCAAGAAACAAACCCGGTGAAATTTGCATAAGAGGCACAAAGGTTATGAAAGGATATCTAAATGACCCAGAGGCTACAGAGAGAACTATAGACAAAGATGGATGGCTACACACAGGAGATATTGGTTTCATCGATGATGATGATGAACTCTTCATTGTTGATCGGTTAAAGGAATTAATCAAATACAAAGGATTCCAAGTAGCTCCTGCTGAGCTCGAAGCATTGTTGATTGCCCACCCAAACATTTCTGATGCTGCCGTTGTAGGCATGAAAGATGAAGCTGCAGGAGAAATTCCAGTTGCATTTGTTGTAAGGTCAAATGGTTCTGAGATCACCGAGGATGAAATCAAGAAATACATTTCACAACAGGTGGTATTTTACAAGAGAATCGGTAGAGTTTTCTTCACAGACTCTATTCCTAAAGCACCCTCAGGCAAAATTCTGCGAAAGCTATTAACTGCAAGACTTAGCGAAGGTTTGGTGATGGCCAATTAG 1695 0.5021 MHTCWHHLQANSQIFLLQQKMAPPPQEFIFRSPLPDIPIPTHLPLYSYCFQNLSQFQNRPCLIDGDTGETLTYADVDLAARRIAAGLHKIGIRQGDVVMLVLRNCPQFALAFLGASRRGAVVTTANPFYTPTELAKQATATKARLVITQSAYVEKIKSFAESNDVMVMCIDDYASENDDVLHFSTLTNADETEAPAVKIDPDDLVALPFSSGTSGLPKGVMLSHKNLVTTIAQLVDGENPHQYTHSEDVLLCVLPMFHIYALNSILLCGIRSGAAVLIVQKFEITTLLELIEKYKVTVASFVPPIVLALVKSGEAHRYDLSSIRAVVTGAAPLGGELQDAIKARLPHATFGQGYGMTEAGPLTISMAFAKEPSKIKSGACGTVVRNAELKIVDTETGASLPRNKPGEICIRGTKVMKGYLNDPEATERTIDKDGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPNISDAAVVGMKDEAAGEIPVAFVVRSNGSEITEDEIKKYISQQVVFYKRIGRVFFTDSIPKAPSGKILRKLLTARLSEGLVMAN 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00805 564 FunFam Long-chain-fatty-acid--CoA ligase FadD 31 457 - -
Pumo4g00805 564 SUPERFAMILY Acetyl-CoA synthetase-like 30 558 - -
Pumo4g00805 564 FunFam 4-coumarate--CoA ligase 2 458 559 - -
Pumo4g00805 564 Gene3D - 24 456 IPR042099 -
Pumo4g00805 564 Gene3D - 457 559 IPR045851 -
Pumo4g00805 564 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 553 - -
Pumo4g00805 564 Pfam AMP-binding enzyme 52 462 IPR000873 -
Pumo4g00805 564 CDD 4CL 39 552 - -
Pumo4g00805 564 ProSitePatterns Putative AMP-binding domain signature. 207 218 IPR020845 -
Pumo4g00805 564 Pfam AMP-binding enzyme C-terminal domain 471 546 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00805 Pumo-Chr4 10543040 10549243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00805 9 524 Monolignol Biosynthesis Gene Families AT1G51680 64.436 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00805 K01904 - gmx:548034 1003.05