Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00804 ATGGAAGAGCAACAACCTACACAGCCTCAACACGACGAGTTCATTTTCCATTCCAAACTTCCCGACATTTACATCCCAACGCACCTCCCTCTCCACACTTACATCTTCCAAAACCTCTCCCAATTCAAAGACCGTCCCTGCCTCATCAACGCCGCCACCGGCCAGACATTCACCTACGCCGCCGTCGAACTCACCGCCCGCAGAGTCGCCGCCGGTCTCAACAAACTCGGCATCGAACAAGGCGACGTCATCCTCCTCCTCCTCCAGAACTGCCCCCACTTCGTCTTCGCATTCCTCGGCGCCTCCTACCGCGGCGCCACCGTCACCACCGCCAATCCCTTCTACACTCCGGCCGAGGTGGCGAAGCAAGCCACTGCTTCCAACTCCAAACTCATCATAACGCAAGCTTCCTACGTGGACAAGGTCAATGATTTCGCAAGAGAAAACGACGTCAGAGTGATGTGCATTGACGCGGCGCCGGAAGGATACCTTCACTTCTCGGGGTTAACGGAGGCCGACGAGGGAGAGATTCCCGCAGTTAAAATATCTCCAGACGACGTCATTGCGCTGCCGTATTCGTCTGGCACCACGGGGCTCCCCAAGGGAGTGATGCTAACGCACAAGGCACTCGTTACGAACCTGGCACAACAGGTTGATGGAGAGAACCCTAATTTGTATTTTCGAAGCGACGATGTGGTGGCTTGCGTGCTACCACTTTTTCACATTTATGCGCTCAACTCTGCTTTGCTGTGTTCCCTTCGAGTTGGGGCTGCCGTTTTGATCATGCCCAAATTTGAGATCGTTACATTGTTGGAGTTGGTGCAGAAACACAAGGTGAGCATCGCGCCATTTGTGCCACCCATCGTTTTGGCCATTGCAAAGAGTCCCGATTTGGAGCGATACGACTTGTCGTCGATTCGGATGATTATGTGCGGTGCGGCACCCATGGGAAAGGAACTTGAGGATTCTGTCAGGGCCAAAATTCCCAACGCCATACTCGGACAGGGTTATGGGATGACAGAGGCAGGACCGGTGCTATCAATGTGCTTGGCATTTGCGAAGGAGCCAGTGCAGGTGAAATCAGGTGCGTGCGGGACCGTCGTAAGAAATGCAGAGATGAAGATCGTTGACCCTCATACTGGTGCTTCGCTTCATAGGAATCAAGCTGGTGAGATTTGTATCAGAGGCAACCAGATTATGAAAGGTTACCTAAATGATCAAGAGGCCACACAAAGAACTATAGACAAGGAAGGATGGTTGCATACAGGTGATATTGGGTACATTGACGATAATGATGAGCTTTTCATAGTTGATCGGTTAAAGGATCTTATCAAATACAAAGGATTTCAAGTCGCTCCAGCTGAGCTCGAAGCCATGTTAATTGCTCACCCAGGCATTTCTGATGCTGCTGTTGTGTCCATGAAGGATGAAGTTGCAGGAGAAGTTCCTATTGCATTTGTTGTACCATCAAATGGTTCTAAGATCTCCGAGGATGAAATCATGCAATACATCTCAAAGCAGGTTGTGTTTTACAAAAGAATCAGTAGGGTTTTCTTTGTGGGCTCAATTCCAAAGGCTCCCTCTGGAAAGATCTTGCGGAAAAACCTTAGGGCAAGGTATTGA 1623 0.5028 MEEQQPTQPQHDEFIFHSKLPDIYIPTHLPLHTYIFQNLSQFKDRPCLINAATGQTFTYAAVELTARRVAAGLNKLGIEQGDVILLLLQNCPHFVFAFLGASYRGATVTTANPFYTPAEVAKQATASNSKLIITQASYVDKVNDFARENDVRVMCIDAAPEGYLHFSGLTEADEGEIPAVKISPDDVIALPYSSGTTGLPKGVMLTHKALVTNLAQQVDGENPNLYFRSDDVVACVLPLFHIYALNSALLCSLRVGAAVLIMPKFEIVTLLELVQKHKVSIAPFVPPIVLAIAKSPDLERYDLSSIRMIMCGAAPMGKELEDSVRAKIPNAILGQGYGMTEAGPVLSMCLAFAKEPVQVKSGACGTVVRNAEMKIVDPHTGASLHRNQAGEICIRGNQIMKGYLNDQEATQRTIDKEGWLHTGDIGYIDDNDELFIVDRLKDLIKYKGFQVAPAELEAMLIAHPGISDAAVVSMKDEVAGEVPIAFVVPSNGSKISEDEIMQYISKQVVFYKRISRVFFVGSIPKAPSGKILRKNLRARY 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00804 540 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Pumo4g00804 540 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 538 - -
Pumo4g00804 540 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 441 - -
Pumo4g00804 540 FunFam 4-coumarate--CoA ligase 2 442 540 - -
Pumo4g00804 540 Gene3D - 7 440 IPR042099 -
Pumo4g00804 540 CDD 4CL 25 536 - -
Pumo4g00804 540 Pfam AMP-binding enzyme 37 446 IPR000873 -
Pumo4g00804 540 Gene3D - 441 540 IPR045851 -
Pumo4g00804 540 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Pumo4g00804 540 SUPERFAMILY Acetyl-CoA synthetase-like 12 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00804 Pumo-Chr4 10524535 10529798 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00804 1 508 Monolignol Biosynthesis Gene Families AT1G51680 69.246 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00804 K01904 - gmx:100779668 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00804 4 10524535 10529798 Pumo4g00804 4 10524535 10529798 ECH