Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00783 ATGCATTCGAGTTCAAGCGAGTTCGACGGCAACGCAGCCTTCTCCGGTGGCGGATTCATGCCTTCTCCTCAGGCTACTCACGCCCCTGAACCTTCGTCTTACTATACCTCCAAGAGTCGAGATCGTGATGCTCAAACCTTGCTTCCTCTGACGGTGAAGCAGATATACGATGCGTTTCAGTCAAATGATGATAAAACCAATTTAATTGTTGATGGTGTAGACCTTAACAACATTACTCTTGTAGGAAGGGTGTGCAACAAAGCTGAACGAATTACTGATGTCACTTTTGTGCTTGATGATGGTACTGGGAGGATTGAGTGCAATAAATGGCTTCAGGAGGCATTTGATACAAATGAAGCTGATGGTATCTTGGACGGAATGTATGTGAGGCTCTATGGAGTCTTGAAAGCATTTCAGGGTAAAAATATCTTAAATGTTTTCTCTTTTAGGCCTGTCACTGACTTTAATGAGATTGCCAGTCATTTCATCGATTGCATATATGTGCATCTCTATAATTCCAGGTTACAGACTAGGGTCCGTAATCAGCAAGTTGTGAATTCCACACCAATTACTCCCACAAAAGGTTACCAAGCTCAAGCTGTTCCACCATCAGATCAGTTCTCTGGTCAACATATCAATGGTCAGAAGAGTGATGAAGCTATGGTCTCAGAATTTTTGCAAGCAAACATCTCAAGGAATGAGGGAGTCCATCGTGATCTTATTGCACAGCATCTTGGAATTTCTTTTGATAAGCTCATGCTGGCTATTAAAAATCTTATTAATGAAGGTTCCGTTTATGAAACCATAGGTGATCACTATAAGTCAGCCGTCAATGCTTGA 840 0.419 MHSSSSEFDGNAAFSGGGFMPSPQATHAPEPSSYYTSKSRDRDAQTLLPLTVKQIYDAFQSNDDKTNLIVDGVDLNNITLVGRVCNKAERITDVTFVLDDGTGRIECNKWLQEAFDTNEADGILDGMYVRLYGVLKAFQGKNILNVFSFRPVTDFNEIASHFIDCIYVHLYNSRLQTRVRNQQVVNSTPITPTKGYQAQAVPPSDQFSGQHINGQKSDEAMVSEFLQANISRNEGVHRDLIAQHLGISFDKLMLAIKNLINEGSVYETIGDHYKSAVNA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00783 279 Pfam OB-fold nucleic acid binding domain 79 146 IPR004365 GO:0003676
Pumo4g00783 279 PANTHER REPLICATION PROTEIN A-RELATED 7 276 IPR040260 -
Pumo4g00783 279 Gene3D - 209 277 IPR036388 -
Pumo4g00783 279 FunFam replication protein A 32 kDa subunit A-like 40 174 - -
Pumo4g00783 279 PIRSF RPA32 2 277 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pumo4g00783 279 SUPERFAMILY Nucleic acid-binding proteins 47 173 IPR012340 -
Pumo4g00783 279 CDD RPA2_DBD_D 77 170 - -
Pumo4g00783 279 MobiDBLite consensus disorder prediction 26 40 - -
Pumo4g00783 279 Pfam Replication protein A C terminal 169 271 IPR014892 -
Pumo4g00783 279 SUPERFAMILY "Winged helix" DNA-binding domain 214 274 IPR036390 -
Pumo4g00783 279 Gene3D - 39 174 IPR012340 -
Pumo4g00783 279 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00783 Pumo-Chr4 10266168 10268690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00783 4 274 Core DNA Replication Machinery Family AT2G24490 44.286 1.91e-71 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00783 K10739 - gmx:100782819 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00783 4 10266168 10268690 Pumo4g00783 4 10266168 10268690 ECH