Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00782 ATGTATTCGAGTCCAAGCCAGTTCGACGGCAATGCAGCCTTCTCCGGCGGTGGATTCATGCCTTCTCAGACCACCCAGGGCCCTGACCCTTCGTTAGTTCCTTCCAAGAATCACGAAGCTCAGTCCTTGCTTCCTCTGACAGTGAAGCAGATATACAATGCGATTCAGTCAAGTGATGATAAAATCAACTTGATTGTTGACGGTGTGGACGTTAGCAATGTCACTCTTGTAGGGAGGGTGTCCAACAAAGCTGGACGAATTACTAATGTTACTTTTGTGCTTGATGATGGTACTGGGAGGATTGAGTGTAATAAATGGCTTCATGAAGCTGCTGATACAAATGAAGCAGAGGCTATCTTGGATGGAATGTATGCGAGGCTCCATGGACAATTGAAACATTTTCAGGGTAAAAGGTCCTTAAATGTTTTCTCTTTTAGGCCTGTTACTGACTTTAACGAGATTGCTAGTCATTTCATCGATTGCATATATGTGCATCTCTACAATTCCAGAATACGGCAACATTCCTCACCAATTACTCCCACAATAGGTTATCAAGCTCAAGCTGTTCCACCAACAAATCAGTTCTTTGATCAACATATCAATGGTCAGAATGGTGTTGAAGAATTGGTCTTAGAATTTTTGCATCTTCCTGCAAACAGCTCAAGGGATGAGGGAGTCCATCGTGATCTTATTGCACAGCATCTTGGAATTTCTGTGGATGAGCTCATGCTGGCTGTTAAAAATCTTATTGTTGAAGGTGCCGTTTATGAAACAATAGGTGATCACTATAAGTCAATCATCAATGGTTGA 810 0.4235 MYSSPSQFDGNAAFSGGGFMPSQTTQGPDPSLVPSKNHEAQSLLPLTVKQIYNAIQSSDDKINLIVDGVDVSNVTLVGRVSNKAGRITNVTFVLDDGTGRIECNKWLHEAADTNEAEAILDGMYARLHGQLKHFQGKRSLNVFSFRPVTDFNEIASHFIDCIYVHLYNSRIRQHSSPITPTIGYQAQAVPPTNQFFDQHINGQNGVEELVLEFLHLPANSSRDEGVHRDLIAQHLGISVDELMLAVKNLIVEGAVYETIGDHYKSIING 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00782 269 Gene3D - 197 267 IPR036388 -
Pumo4g00782 269 Pfam Replication protein A C terminal 185 261 IPR014892 -
Pumo4g00782 269 Gene3D - 35 170 IPR012340 -
Pumo4g00782 269 PANTHER REPLICATION PROTEIN A-RELATED 7 266 IPR040260 -
Pumo4g00782 269 SUPERFAMILY Nucleic acid-binding proteins 43 169 IPR012340 -
Pumo4g00782 269 FunFam Replication protein A 32 kDa subunit B 55 172 - -
Pumo4g00782 269 SUPERFAMILY "Winged helix" DNA-binding domain 201 266 IPR036390 -
Pumo4g00782 269 PIRSF RPA32 2 267 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pumo4g00782 269 Pfam OB-fold nucleic acid binding domain 74 146 IPR004365 GO:0003676
Pumo4g00782 269 CDD RPA2_DBD_D 73 166 - -
Pumo4g00782 269 MobiDBLite consensus disorder prediction 13 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00782 Pumo-Chr4 10258713 10263320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00782 1 266 Core DNA Replication Machinery Family AT2G24490 42.086 1.54e-71 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00782 K10739 - gmx:100782819 478.018