Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00781 ATGGACTCTTCTTCATCACCGCCAAACACCAACACCAACACCAACTCCCTCGCTTTCTCTCTTTCTAATCACTTTCCTAATCCTTCTTCCTCACACCCTTCCTCTCCCCTCTCCCTTTTCCACTCCTTCACCTATCCATCTCTCACTCTCACAGGCAGCAACACGGTGGACGCATCCTCCGAGGCCACCGCCGGCGGGGGAGCGACCAACCTCTCCATATTCACCGCCGGCCCCAAGTTCGAGGACTTCCTGGGCGGTTCCGCCGCAACAGCCACCTCCGCCACGTGTGCACCGCCACAGCTTCCGCAGTTCTCCACCGACAACAACAACAGCCTATACGATTCGGAGCTGAAGTCAACAATAGCCGCGTGCTTCCCTAGCGGCTTCGCCGCCGAACCAACCACCGAACCTCAAAAACCCTCTCCGAAGAAAACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCGACATAGATGGACTGGGAGATATGAAGCTCATCTATGGGACAATAGTTGTAGAAGGGAAGGACAAAGCAGGAAAGGAAGACAAGTTTACTTGGGTGGTTATGACAAGGAAGATAAGGCAGCCAGAGCTTACGATCTCGCAGCTCTCAAGTACTGGGGTCCAACTACCACCACCAACTTTCCCATTTCCAACTATGAAAAGGAACTGATGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGAAGGAAGAGCAGTGGTTTCTCAAGGGGGGCCTCTATATACAGAGGAGTGACGAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAGGACCTCTACCTTGGCACTTTCAGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCCATCAAATTCAGGGGATTAAATGCAGTCACAAACTTCGACATGAGTCGCTACGACGTGAAGAGCATTGCAAATAGTACTCTTCCCATTGGTGGTTTATCTGGCAAGAATAAAAACTCCACAGATTCTGCATCTGAGAGCAAAAGCCACGAGGCGAGCCGATCCGACGAACGAGATCCATCATCTGCTTCAACCGTGACCTTTGGATCACAGCAACAACCTTCAAGCTCCACCCTAAGCTTTGCCATTCCCATTAAACAAGACCCTTCAGATTACTGGTCCATCTTGGGGTACCATAATCCTTCTTCCCTTGACAACAGTGGCGTGAGGAACACTAATAGTGTTACTACTACAACTTCTTTTCCATCTTCCAACAATGTTGGCACTGCTAGCAGTGTGACACCCTTCCACATGGACTTCTCAAGTGTCCCCTCAAGTACCGGCAGTGATAACAATGCCGCATTTTTCAGTGGAGGAGGAGGCATCTTTGTTCAGCAACAAAGTAATGGTCATGGTCATGGAAGTGGAAGCAGTGGTTCCTCGTCTTCTTTAAGCTGTTCAATCCCATTCGCCACGCCCATCTTTTCTCTAAATAGTAATGCTAGTTATGAGAGCAGTGCTGGTTATGGAAACTGGATTGGACCAACCCTGCACACATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACGCCAATATTTGGCATGGAATGA 1617 0.5034 MDSSSSPPNTNTNTNSLAFSLSNHFPNPSSSHPSSPLSLFHSFTYPSLTLTGSNTVDASSEATAGGGATNLSIFTAGPKFEDFLGGSAATATSATCAPPQLPQFSTDNNNSLYDSELKSTIAACFPSGFAAEPTTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELMEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSGKNKNSTDSASESKSHEASRSDERDPSSASTVTFGSQQQPSSSTLSFAIPIKQDPSDYWSILGYHNPSSLDNSGVRNTNSVTTTTSFPSSNNVGTASSVTPFHMDFSSVPSSTGSDNNAAFFSGGGGIFVQQQSNGHGHGSGSSGSSSSLSCSIPFATPIFSLNSNASYESSAGYGNWIGPTLHTFQSHAKPSLFQTPIFGME 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00781 538 FunFam AP2-like ethylene-responsive transcription factor ANT 154 223 - -
Pumo4g00781 538 Gene3D AP2/ERF domain 155 223 IPR036955 GO:0003700|GO:0006355
Pumo4g00781 538 Gene3D AP2/ERF domain 257 317 IPR036955 GO:0003700|GO:0006355
Pumo4g00781 538 MobiDBLite consensus disorder prediction 330 380 - -
Pumo4g00781 538 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 79 411 - -
Pumo4g00781 538 CDD AP2 256 317 IPR001471 GO:0003700|GO:0006355
Pumo4g00781 538 Pfam AP2 domain 257 307 IPR001471 GO:0003700|GO:0006355
Pumo4g00781 538 Pfam AP2 domain 155 213 IPR001471 GO:0003700|GO:0006355
Pumo4g00781 538 CDD AP2 154 223 IPR001471 GO:0003700|GO:0006355
Pumo4g00781 538 SUPERFAMILY DNA-binding domain 256 317 IPR016177 GO:0003677
Pumo4g00781 538 ProSiteProfiles AP2/ERF domain profile. 155 221 IPR001471 GO:0003700|GO:0006355
Pumo4g00781 538 SMART rav1_2 155 227 IPR001471 GO:0003700|GO:0006355
Pumo4g00781 538 SMART rav1_2 257 321 IPR001471 GO:0003700|GO:0006355
Pumo4g00781 538 MobiDBLite consensus disorder prediction 1 33 - -
Pumo4g00781 538 SUPERFAMILY DNA-binding domain 154 223 IPR016177 GO:0003677
Pumo4g00781 538 ProSiteProfiles AP2/ERF domain profile. 257 315 IPR001471 GO:0003700|GO:0006355
Pumo4g00781 538 MobiDBLite consensus disorder prediction 360 380 - -
Pumo4g00781 538 FunFam AP2-like ethylene-responsive transcription factor 256 317 - -
Pumo4g00781 538 PRINTS Ethylene responsive element binding protein signature 297 317 IPR001471 GO:0003700|GO:0006355
Pumo4g00781 538 PRINTS Ethylene responsive element binding protein signature 156 167 IPR001471 GO:0003700|GO:0006355
Pumo4g00781 538 MobiDBLite consensus disorder prediction 344 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00781 Pumo-Chr4 10242591 10246429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00781 84 404 AP2-EREBP Transcription Factor Family AT5G57390 66.082 1.31e-142 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pumo4g00781 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00781 K09285 - gmx:100797828 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00781 4 10242591 10246429 Pumo4g00781 4 10242591 10246429 ECH