Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00780 ATGGCTACAGATTCGTCTTTTGAGGGCCTTGCACTTGATCCTTCCAAGTGTGGTAAATTGAGTATGGAGGAAAAAAGAGAGCTTGTATATGAAGTATCTAAGTGGTCGCATGGTGCATCTGAGATGCTGCAGTCATGGAGCCGTCAAGAGATTTTGCAAATATTGTGTGCAGAAATGGGGAAAGAGAGAAAGTATACTGGGCTGACAAAGTTGAAAATTATAGAAAATCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGGAATGAAACTGCAACAGACTCTGAACCACAATCTTCTCCTGCACCTGGTCAGAAGCCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCACATGTACCTGTTCCTGCGATCAGCGTTTCAGTCAATAATGGTGGTGATTCTGTTAATACCACATACTGCAAAAACTCAGCTTGCAAAGCTACCCTGAATCAATCAGATGCATTTTGCAAAAGATGTTCATGCTGCATTTGTCATCAATATGATGACAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCTGGTGTTTCTTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCAGGAATTGGCAAGGATGGTGAGCGTCCCAAGCTTGATGGAGGCTTCTACTGTGTCTCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGCGTAGATATACTCTGTTATCGTGTCTCCTTAAGCCAAAGACTTTTACAAGGAACTGAAATGTATGAAGAACTTTATAAAATTGTCGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGTCCACTCACTGGCTCACCGGTGAAGATTGGTAGGGGGATTGTGAACAGGCTTTCGTCAGGACCTGAGGTTCAGAAACTCTGTGGTTTTGCTCTGGAATCACTTGATTCACTGCTTTCGAAAAGGATCTTGCCTTCGTCACCCAATCCAACAACTCAAGATGCACATTTGCTGGCTCCAAATATGGTGAGGTTTGAAGATGTCACTGCCACATCCCTCACTATTATTTTGGGTACTGAAGATCCCTCTGGTGAAAATATTGCTGGTTACACCTTGTGGCATCGCAAAGCTGATGATGTGGACTATCTCACGGACCCAACTTGCACCTCGCTCCTACTAAATAGAAGGTTCAGTGTCGGGGGTCTAATTCCAGGTACAGAATACAGTTTCAAAGTTGTTTCCAATGATTCGAGGGAGTCAGGTATGTGCGAAGTTCAAGTCTCGACGGAGCATGGCGAGGATGAAGTCCCTAATTGCTCAGCAACAGAAAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCATCATCAGTGGAAGATGAAACTAATAACTGTAATCCATTTAGTGACCTGACTGATAACCGAGCCGACCATTATCCTTCTTATCACAAGGATAGCGACCAGCTTGCTTCTGGAAATTTATCCAATGATGCTGTTAACTGTTCCAATCTAGGTGGTGCAGGACTTCCTCCTGACGCAGATTCTTTGTCAGACAAGCAGCATGCTGGAGGAATGACTGCCTCCATACCTAGTTCTGATGTGCTAAAGCTTGAAAACAAGCATTCGCCAGAGGAGCAAGTCACTGAGGACATGAGCACTGATGATGGGTTGAACTCCCCAGCTCTAACTGGGAGGGAATGTGTGCCGTTAGTAGGTAGCTCGGAAGGAGGCTTGCCTAATACTCCCTGCAAGTTGGAAACACTTAAGGATGGACCTGGAAAGAATAAAAGATCTAAGTCCAGCGGCAAAGATCAAGAAAATGGATCTGGGAAAAGGGAGGGCCCCCAAGATGGAAGCACATCCAAGAAGAGAAGTGGAGAAAGGCAAGAGGAGGGCCGTGTCGCAAATGGCTTTTCGGATCGGGATTTTGAGTATTATGTGAAGGTGATTAGGTGGTTAGAGTGTGAAGGACACATAGAGAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACCCCTCAAGAAGTAAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAGCAACTTGTGGACACCTTCTCAGAATGTATATCCAGCAACAGAACTTCAGTGGTGCCAGCGGGGTTCTGCATGAAGCTTTGGCATTGA 2214 0.4431 MATDSSFEGLALDPSKCGKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGNETATDSEPQSSPAPGQKPAKRQRKSENPSHVPVPAISVSVNNGGDSVNTTYCKNSACKATLNQSDAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIGKDGERPKLDGGFYCVSCGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEMYEELYKIVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKLCGFALESLDSLLSKRILPSSPNPTTQDAHLLAPNMVRFEDVTATSLTIILGTEDPSGENIAGYTLWHRKADDVDYLTDPTCTSLLLNRRFSVGGLIPGTEYSFKVVSNDSRESGMCEVQVSTEHGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPFSDLTDNRADHYPSYHKDSDQLASGNLSNDAVNCSNLGGAGLPPDADSLSDKQHAGGMTASIPSSDVLKLENKHSPEEQVTEDMSTDDGLNSPALTGRECVPLVGSSEGGLPNTPCKLETLKDGPGKNKRSKSSGKDQENGSGKREGPQDGSTSKKRSGERQEEGRVANGFSDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSNRTSVVPAGFCMKLWH 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00780 737 CDD FN3 346 427 IPR003961 GO:0005515
Pumo4g00780 737 SUPERFAMILY Fibronectin type III 345 428 IPR036116 GO:0005515
Pumo4g00780 737 ProSiteProfiles Fibronectin type-III domain profile. 346 441 IPR003961 GO:0005515
Pumo4g00780 737 MobiDBLite consensus disorder prediction 599 644 - -
Pumo4g00780 737 Gene3D Immunoglobulins 329 432 IPR013783 -
Pumo4g00780 737 MobiDBLite consensus disorder prediction 513 644 - -
Pumo4g00780 737 MobiDBLite consensus disorder prediction 531 545 - -
Pumo4g00780 737 MobiDBLite consensus disorder prediction 440 481 - -
Pumo4g00780 737 MobiDBLite consensus disorder prediction 434 501 - -
Pumo4g00780 737 MobiDBLite consensus disorder prediction 86 105 - -
Pumo4g00780 737 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Pumo4g00780 737 MobiDBLite consensus disorder prediction 86 129 - -
Pumo4g00780 737 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 737 IPR044514 GO:0010048|GO:0040029
Pumo4g00780 737 CDD PHD_VIN3_plant 161 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00780 Pumo-Chr4 10212219 10217314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00780 4 474 PHD Gene Family AT4G30200 55.378 8.58e-166 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00780 - - gmx:100794721 1442.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00780 4 10212219 10217314 Pumo4g00780 4 10212219 10217314 ECH