Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00777 ATGAGGTATATTCGGAGCAGCAGCTTCAAGAGGCTCTTCTCCTTGAGAAGACGCGGTTCAAGGGAACAAATTCCAAGTCCTAGGAGTGAAGAAAACTATGAGACTCTTCCGCATGAAGAAGAACCTTCTCCAAGACCCTCTTGGAAGTGCTTCTCTTATGAAGAGTTGTTTGATGCCACAAATGGCTTCAGCTCAGAAAATTTGGTTGGAAAAGGAGGGTATGCTGAGGTTTACAAGGGAACAATGAATGGTGGTGAGGAAATTGCTGTGAAGAGACTCACAAGAACTTCAAGGGATGAGAGAAAGGAGAAAGAGTTTTTGACAGAGATTGGTACAATTGGTCATGTGAACCATTCTAACGTGTTGCCTCTTTTGGGGTGTTGTATTGACAATGGCCTTTACCTTGTTTTTGATCTATCTTCCAGAGGTTCTGTTGCATCTCTTCTTCATGATGAAAAATTGTCTCCTTTAGATTGGAAAACGAGGCATAAGATAGCCATTGGAACTGCACGAGGCCTTCACTACTTGCATAAGGGCTGCAAGAGGAGGATAATCCACCGAGACATTAAGGCTTCAAACATTTTGTTAACCAAGGATTTTGAACCACAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCTCAATGGACTCATCATTCAATTGCCCCAATAGAGGGGACATTTGGACATTTGGCCCCAGAGTACTACTTGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCTTGCTAGAAGTAATCTCTGGCAGAAAACCAGTGGATGGGTCTCACCAAAGCTTACATAGCTGGGCTAAACCAATTTTGAACAAGGGTGAGATAGAAGAGTTGGTGGATCCAAGGCTTGAAGGGGCTTATGATGTGACACAGTTAAAAAAATTTGCCTTCGCTGCCTCTCTTTGCATTCGGGCATCTTCAACTTGGCGACCTACCATGAATGAGGTATTAGAGATAATGGAGGAAGGAGAAACGGATATAGAGAAGTGGAAAATGCCAGAGGAAGAAGAAGAGCAAGAGGAGGAGTTCTGGGGTTTTGAGGATCTGGAATATGAATATGACAGCTCCTTTTCAATGTCTTTGCTTGACTCCATTGGAAGTACTTAG 1137 0.4301 MRYIRSSSFKRLFSLRRRGSREQIPSPRSEENYETLPHEEEPSPRPSWKCFSYEELFDATNGFSSENLVGKGGYAEVYKGTMNGGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLVFDLSSRGSVASLLHDEKLSPLDWKTRHKIAIGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGEIEELVDPRLEGAYDVTQLKKFAFAASLCIRASSTWRPTMNEVLEIMEEGETDIEKWKMPEEEEEQEEEFWGFEDLEYEYDSSFSMSLLDSIGST 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00777 378 Gene3D Phosphorylase Kinase; domain 1 34 138 - -
Pumo4g00777 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Pumo4g00777 378 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
Pumo4g00777 378 CDD STKc_IRAK 69 332 - -
Pumo4g00777 378 MobiDBLite consensus disorder prediction 18 45 - -
Pumo4g00777 378 Gene3D Transferase(Phosphotransferase) domain 1 141 355 - -
Pumo4g00777 378 ProSiteProfiles Protein kinase domain profile. 63 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00777 378 Pfam Protein tyrosine and serine/threonine kinase 66 271 IPR001245 GO:0004672|GO:0006468
Pumo4g00777 378 FunFam Putative receptor-like serine/threonine-protein kinase 30 139 - -
Pumo4g00777 378 PANTHER OS08G0249100 PROTEIN 28 359 IPR046958 -
Pumo4g00777 378 FunFam Putative receptor-like serine/threonine-protein kinase 141 355 - -
Pumo4g00777 378 ProSitePatterns Protein kinases ATP-binding region signature. 69 91 IPR017441 GO:0005524
Pumo4g00777 378 MobiDBLite consensus disorder prediction 18 46 - -
Pumo4g00777 378 SMART serkin_6 63 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00777 Pumo-Chr4 10184672 10190234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00777 47 326 Trihelix Transcription Factor Family AT1G68690 46.021 3.80e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pumo4g00777 PK_Tyr_Ser-Thr 3.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00777 - - gmx:100819499 711.835