Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00774 ATGGAGTGGGACAGCAATTCCGATCTGAGCGGGGACGAAGAGGAGGAAGAGTTCCTTCTCAACGGCCACCACGCCGACGATGGCCCTCTCCCCTTCCCCTTCCCCGCCGTCGAAAACCTCCTCCAAACGGCGCCCTGCGGCTTCGTCGTCACCGACGCCCTCGAGCCCGACCACCCTATCATTTACGTCAACACCGTCTTCGAGATCGTCACCGGCTACCGCGCCGAGGATGTCCTCGGTCGGAATTGCCGTTTCCTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCGTTGGTGGACTCAACAGTAGTTTCAGAAATTAGAAGATGCCTTGAAGAGGGGATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCTCTGATGAACAGATTGCGGATGACACCTATTTATGGAGACGATGAGACTATAACACATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTGTTCCGGGTTCTACAATTAAGGAATCTGCTAAATCGTCTGATCGATTTCGTTCTGTGCTTTCCTCGTTGCATACTCTTCCGGTGGGGGACAGGAATGTATCTCGTGGAGTTTGTGGGATTTTTCAATTGAGTGATGAGGTACTGTCTCTAAAGATACTTGCTCGATTAACTCCTAGAGATATTGCATCAGTTAGCTCTGTTTGTAGACGATTATATGAGCTTACAAAAAATGAAGACCTCTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCAAGGGAATTGACCACTCTTGAAGCAGCAGCATGGAGGAAGTTGACCGTTGGAGGTGCTGTTGAACCCTCGCGCTGTAATTTTAGTGCGTGTGCAGTTGGTAATAGAGTCGTGCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACACGTCCAGGTAAGCTCTCCTCCTCCTGGTCGTTGGGGCCACACGCTTTCTTGTGTTAATGGTTCTCATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCCTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATATCTGGATTGGCACCTCCACTTCCCAGATCATGGCACAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGGGGATGTGCTGACTCTGGAGTACTCTTGAGTGACACTTTCCTCCTTGATTTGTCGATGGAGAAGCCTGTCTGGAGGGAGATACCAGTGGCATGGACCCCACCATCTCGTCTGGGCCACACATTGTCTGTCTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCTTGCGTTTTCGTTCCAGTGATGTATTCACAATGGATTTAAGTGAGGATGAACCTTGTTGGAGATGTGTAACGGGGAGTGGCATGCCTGGTGCTGGAAATCCTGGGGGCATCGCTCCTCCTCCTAGACTTGATCATGTTGCTGTTAGTCTTCCAGGTGGGAGAATTCTAATATTTGGTGGCTCTGTTGCTGGTCTTCACTCTGCCTCTCAGCTTTACATTCTTGATCCAACTGATGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGGCGCCCTCCGAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTATTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGCGAGCTCCATGAACTTTCTCTGGCGAGTTCTGTCGTCTAA 1857 0.4949 MEWDSNSDLSGDEEEEEFLLNGHHADDGPLPFPFPAVENLLQTAPCGFVVTDALEPDHPIIYVNTVFEIVTGYRAEDVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRMTPIYGDDETITHVIGIQFFTEANIDLGPVPGSTIKESAKSSDRFRSVLSSLHTLPVGDRNVSRGVCGIFQLSDEVLSLKILARLTPRDIASVSSVCRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEDEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVV 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00774 618 SUPERFAMILY Galactose oxidase, central domain 288 603 IPR011043 -
Pumo4g00774 618 CDD PAS 44 154 IPR000014 -
Pumo4g00774 618 Gene3D - 279 481 IPR015915 GO:0005515
Pumo4g00774 618 SUPERFAMILY PYP-like sensor domain (PAS domain) 44 155 IPR035965 -
Pumo4g00774 618 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 35 615 - -
Pumo4g00774 618 FunFam Putative LOV domain-containing protein 279 483 - -
Pumo4g00774 618 Gene3D - 482 616 IPR015915 GO:0005515
Pumo4g00774 618 Pfam F-box-like 214 252 IPR001810 GO:0005515
Pumo4g00774 618 CDD F-box_AtADO-like 205 251 - -
Pumo4g00774 618 FunFam Adagio protein 1 34 166 - -
Pumo4g00774 618 Pfam PAS domain 45 155 IPR000014 -
Pumo4g00774 618 Pfam Galactose oxidase, central domain 366 413 - -
Pumo4g00774 618 FunFam Adagio protein 1 203 250 - -
Pumo4g00774 618 ProSiteProfiles F-box domain profile. 217 250 IPR001810 GO:0005515
Pumo4g00774 618 SUPERFAMILY F-box domain 199 267 IPR036047 GO:0005515
Pumo4g00774 618 Gene3D PAS domain 30 166 - -
Pumo4g00774 618 NCBIfam PAS domain S-box protein 40 154 IPR000014 -
Pumo4g00774 618 Gene3D - 203 250 - -
Pumo4g00774 618 ProSiteProfiles PAS repeat profile. 37 115 IPR000014 -
Pumo4g00774 618 FunFam Putative LOV domain-containing protein 484 617 - -
Pumo4g00774 618 Pfam Galactose oxidase, central domain 302 352 - -
Pumo4g00774 618 Pfam Kelch motif 459 510 IPR011498 GO:0005515
Pumo4g00774 618 Pfam Kelch motif 526 573 IPR011498 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00774 Pumo-Chr4 10161938 10166186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00774 41 156 AGC Kinase Gene Family AT5G58140 31.897 1.15e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00774 K12115 - gmx:100301887 1176.39