Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00746 ATGCGTGATAGTGAGAAGAAGTTAAACAACAAAGGATCTAAAAAATCCAGTCCTTTGAAGGTGCGTAAGAAGGGCCAAGGGAAGAAGGATAAAGTGAAAGTGGGATCAAAATCTCACACAAAAAATGTTGGTACTGACATATCAAGGAAGAGAGTTATCTCTTCTCTCAAGATCAAAGGGCCATGTAAGGATTCTTCAGATAAGAAATTGATTACTGGAAAAAATTTGCCTATGAAGAACAAAAAATCTCCACAGAAGCCATCCTCAAAGTTACAAGGTAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGGAAGATGCTGACGGGGTGGTAAAGCTTCAAAAAATGAAGAGAAAGAGAAAGAAGAAAAGGCCTGCAGAGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAACAAGGTATCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCAAGGAAGCAGATTTTAAAATGTAGACTTGGTATTCGTGATGCTATTCACCAGTTAGATTCTCTTGGTTCATTGAGTAGCATTGAAGATACTGCCATTGCTCCGGATGGATCTGTTTATCATGAACATATATTGTGTGTAAAGTGTAAGGTGCATGAAGAACTTCCAGATAATGATATTATACTATGCAATGGTACATGCAAGCGTGCTTTTCACCAAAAATGTCTAGACCCTCCTTTGGACACTGAAAATATTCCTCCCGGAGAGCAGGGCTGGTTTTGTAAATTTTGTGAATGTAAGATGGAAATACTGGAGGCAATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTACTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATACCTGATGGTGAGACTGCATTACTGAATCCTGAAGAAGAATGGCCATCAGATGATTCTGAAGATGATGATTATGATCCAGAGAGGAAAGAAGACAGCCACAATATCAATATGGAAGGAACTGATGATAGTGCATCTGATGACTTAAGCAGTTCTACCAGTCTCTGTTCTTCTAATGGTGAATGTTCTCCCGTCGATGGTGTCAGTCATGAATATTTTTCTGTCAATAACAACATAGATTCTGATGAGTCTGAGGACAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTGATTCTCTTATGACTTTGCATGAAAGTGAGAATAAGCACCCCAATAATGAGCACAACAACATGACTAGAAAAGATTCAAGCACAAAGATCAAAAGGCGTTGTTTTAGGATTCCGCATGATGCAGTTGAGAAGCTTCACCAAGTTTTTGCTGAGAACGAACTTCCTCCAAGATCTATAAGAGAGGGTCTTTCAAAAGAGCTGGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAAACAGAAAGCATCAAGCAGAAGGAGCAGCAGATCAGCTTCATAATATCACTTCTACAAAGAACTCCAGATTACAAAATCAGGAGAATGCCGATCTTTTGAAACCAAAGACCTCGAAAATTACTATGACACATTCCCAAAAGGATGTTAAAAATGTCACTGGAAGAAAGAAAACGAAGTCATCTAGCAAGAAAAGACAACCAGAAATTCCTCCACCTCCAGGAGAAAATGGCAACAAGGACCTTATGGAGATCAGTGATGATGTGAGCTTGAAGAAACTGTTGAAGAAAAGAAAGAAGAGGTTGGTAAAGTTTACATTTGAAGGAGACTCTCAGGCGGCAGAGTTGGAATTTGAAAGACTAAGCAAATTGAAGACTAAAGTAGATAGTATGAAGCAAAAATTAACTTCAATTCAAAATTACAGAGTTAATGGGTTCAAATGA 2037 0.3952 MRDSEKKLNNKGSKKSSPLKVRKKGQGKKDKVKVGSKSHTKNVGTDISRKRVISSLKIKGPCKDSSDKKLITGKNLPMKNKKSPQKPSSKLQGKKASLSSRKEGEDADGVVKLQKMKRKRKKKRPAEDLDDPSRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIHQLDSLGSLSSIEDTAIAPDGSVYHEHILCVKCKVHEELPDNDIILCNGTCKRAFHQKCLDPPLDTENIPPGEQGWFCKFCECKMEILEAMNAHLGTHFSLHSTWQDVFKEEAAIPDGETALLNPEEEWPSDDSEDDDYDPERKEDSHNINMEGTDDSASDDLSSSTSLCSSNGECSPVDGVSHEYFSVNNNIDSDESEDKACGRRQRKAVDYKKLYDEMFGKDAPAYEQLSEDEDWGPGKRKRREKESDAVDSLMTLHESENKHPNNEHNNMTRKDSSTKIKRRCFRIPHDAVEKLHQVFAENELPPRSIREGLSKELGLDTEKVSKWFKNARYLALKNRKHQAEGAADQLHNITSTKNSRLQNQENADLLKPKTSKITMTHSQKDVKNVTGRKKTKSSSKKRQPEIPPPPGENGNKDLMEISDDVSLKKLLKKRKKRLVKFTFEGDSQAAELEFERLSKLKTKVDSMKQKLTSIQNYRVNGFK 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00746 678 SUPERFAMILY Homeodomain-like 470 532 IPR009057 -
Pumo4g00746 678 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 9 672 - -
Pumo4g00746 678 ProSitePatterns Zinc finger PHD-type signature. 223 274 IPR019786 -
Pumo4g00746 678 FunFam pathogenesis-related homeodomain protein-like 214 274 - -
Pumo4g00746 678 Pfam Homeodomain 483 528 IPR001356 GO:0003677
Pumo4g00746 678 CDD PHD_PRHA_like 222 274 IPR045876 -
Pumo4g00746 678 MobiDBLite consensus disorder prediction 346 368 - -
Pumo4g00746 678 MobiDBLite consensus disorder prediction 1 132 - -
Pumo4g00746 678 FunFam pathogenesis-related homeodomain protein 475 539 - -
Pumo4g00746 678 MobiDBLite consensus disorder prediction 16 30 - -
Pumo4g00746 678 MobiDBLite consensus disorder prediction 415 476 - -
Pumo4g00746 678 CDD homeodomain 474 537 IPR001356 GO:0003677
Pumo4g00746 678 Gene3D - 457 539 - -
Pumo4g00746 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 271 IPR013083 -
Pumo4g00746 678 MobiDBLite consensus disorder prediction 319 333 - -
Pumo4g00746 678 MobiDBLite consensus disorder prediction 78 95 - -
Pumo4g00746 678 SUPERFAMILY FYVE/PHD zinc finger 213 280 IPR011011 -
Pumo4g00746 678 SMART PHD_3 222 275 IPR001965 -
Pumo4g00746 678 MobiDBLite consensus disorder prediction 314 368 - -
Pumo4g00746 678 MobiDBLite consensus disorder prediction 546 614 - -
Pumo4g00746 678 ProSiteProfiles 'Homeobox' domain profile. 473 533 IPR001356 GO:0003677
Pumo4g00746 678 MobiDBLite consensus disorder prediction 96 113 - -
Pumo4g00746 678 ProSiteProfiles Zinc finger PHD-type profile. 220 277 IPR019787 -
Pumo4g00746 678 SMART HOX_1 474 537 IPR001356 GO:0003677
Pumo4g00746 678 MobiDBLite consensus disorder prediction 546 580 - -
Pumo4g00746 678 Pfam PHD-finger 223 277 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00746 Pumo-Chr4 9724939 9732474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00746 128 538 Homeobox Transcription Factor Family AT4G29940 56.440 3.88e-152 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Pumo4g00746 Homeodomain 7.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00746 - - gmx:100817639 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00746 4 9724939 9732474 Pumo4g00746 4 9724939 9732474 ECH