Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00737 ATGGAGAATATTGGCGAGTACAACCATTACTGGGAGACCAGCATGTTTTTCCAAAACGAAGAGCTTGGCAGCTGGGCAGTGGATGAAGCAGCGTTGTCAGGGTACTCTGATTCGAGCTCCCCGGACGGTGCTGCTTCTTCATCGGTGGCATCTAAGAACATTGTCTCCGAGAGGAATAGAAGGAAGAAGCTCAACGATAGGCTTTTTGCGCTTAGAGCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCTATCATTAAGGATGCTATTGAATACATCCAGCACTTGCATGAGCAAGAGAAGAGAATCCAAGCTGAGATTTTGGATCTTGAATCTGGGAAGCTCAAAAACCCAACCTATGAATTTGACCAGGACCTCCCTATTCTCCTCAGGTCTAAGAAGAACAGAACAGAACAGCTATTTGATTCTGTCAGTCGTTTAAGAAACTCCCCAATTGAAATAATTGAGCTCAGGGTTACATACATGGGAGAGAAGACGTTTGTGGTGAGCTTGACATGTAGCAAAAGGACAGACACAATGGTAAAACTGTGTGAGGTGTTCGAATCTTTAAAGCTGAAGGTCATTACAGCCAATATCACTTCTTTTTCAGGCACGCTTTTGAAGACAGTCTTCATTGAGGCAGATGAAGAAGAGAAAGACTTTTTGCTGATAAAAATTCAGACAGCGTTTTCAGCTCTCAATGATCCTCAAAGCCCAATGAGTATCTGA 732 0.4358 MENIGEYNHYWETSMFFQNEELGSWAVDEAALSGYSDSSSPDGAASSSVASKNIVSERNRRKKLNDRLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKRIQAEILDLESGKLKNPTYEFDQDLPILLRSKKNRTEQLFDSVSRLRNSPIEIIELRVTYMGEKTFVVSLTCSKRTDTMVKLCEVFESLKLKVITANITSFSGTLLKTVFIEADEEEKDFLLIKIQTAFSALNDPQSPMSI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00737 243 Gene3D - 45 114 IPR036638 GO:0046983
Pumo4g00737 243 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 114 - -
Pumo4g00737 243 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 38 224 - -
Pumo4g00737 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 111 IPR036638 GO:0046983
Pumo4g00737 243 SMART finulus 54 103 IPR011598 GO:0046983
Pumo4g00737 243 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Pumo4g00737 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00737 Pumo-Chr4 9638852 9646435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00737 1 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 61.364 1.79e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g00737 HLH 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00737 - - gmx:100803916 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00737 4 9638852 9646435 Pumo4g00737 4 9638852 9646435 ECH
Pumo4g00737 4 9638852 9646435 Pumo2g01598 2 30021899 30032237 PCT