Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00731 ATGAGTTTCTCCAAGGGTTCTCCTGGCAGCCAGTCGCCGCGTGATATAGAGGCTGGGTCTCCCACTAGCTTCTCTGCTGATTTTGATGATGGAGACTTTTCTGCTGATCCATTTGATCTTACTAGAACAAAGAATGCTCCGGTTCAACGCCTCAGGCGTTGGAGGCAAGCAGCACTTGTGCTCAATGCTTCTCGCCGATTTCGTTACACCTTGGACTTGAAGAAAGAAGAAGAGAAGAAGCGAGTATTAAGAATTGTTATAGTGCATACACGGGCCATTCAAGCCGCATATCGATTCAAGGCAGCTGGGCAAATGAATGGAACTATAAAACCCCCTTCAAGCTCCACTGGAGAATTTTCAATTGGACAAGAACAACTTTGTTCAATTTCAAGGGACCATGATACTACTGCTCTGCAGGAAAATGGAGGGGTTGTAGGGTTATCACATTTGTTGAAAACCAATTTAGAGAAGGGGATTCAAGGTGATGATGCTGACTTGGTAAAACGGAGGAATGCATTCGGCTCCAACAGTTACCCTCAAAAGAGAGGAAGAAGTTTATTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCTGCAATGGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATTCAGGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGACCTAAACGAGCACAAGAGAAACATACATTTGGAGGTTATTCGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAACATTGGTAACCAGGTCCCTGCTGATGGAGTCTTGATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTCGAAAAAAATTCTAATGATCCTTTTCTGATTTCTGGATGTAAAGTTGCAGATGGCAGTGCAACTATGCTGGTAACGGCTGTCGGTATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGACAATGGTGAAGAAACTCCTTTGCAGGTACGCCTAAATGGTCTTGCTACCTTAATTGGTATTGTTGGACTCTCTGTGGCTGTTGTTGTTCTAATGGTGCTACTGGCCAGATATTTCTCCGGGCATACTAGAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAGACCAAAGTTGGTGATGCTATTGATGGAGTAATTAAGATATTCACTGTTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTGCCTTTAGCAGTTACCTTAACACTTGCCTACTCAATGAAAAGAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGAAGATTGCTCCTCACGATAAATCACAGTTCTCTAGTATCCTCTGCTCTTTGCTGATTGAAGGTGTTGCACTGAACACTAATGGAAGTGTTTATATCCCTGAGGGTGGTAATGATGTTGAGGTTTCTGGATCACCGACAGAAAAGGCAATTTTAGAGTGGGGAATTCAGCTTGGGATGAATTTTGACACTGCCAGATCAAAATCATCAATTATTCATGTATTCCCATTCAATTCAGAAAAAAAGCGAGGAGGAGTTGCAATAAAGACGTCTGACTCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCTTGCTGTACATGGTATTTTGATGCTAATGATCAGTTGGTGAAGATGGATGAAGAGAAGATGTCAACTTTTAAAAAAGCTATTGAAGATATGGCTGCTGATAGTCTACGTTGTATTGCGATTGCATATAGATCATATCAAAAGGAGAATGTTCCAACTAGCGAAGAACTTGCCCACTGGTCATTACCAGAGGATGATCTTGTTTTGTTGGCTATTATTGGCCTGAAGGATCCTTGTCGACCTGGTGTCAAAGATGCAGTGAAGCTTTGCCAAAAGGCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGATTCAATTTCTGATGCTACAGAGCCCGTCATCATTGAAGGGAAAAGATTCCGTGCCTTGACAGATGTAGGGAGAGAAGAAATTGTTGAAAGGATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGAGCATGTTGTGGCTGTAACTGGAGATGGAACAAATGATGCTCCTGCACTACATGAGGCCGATATTGGTCTTGCAATGGGTATCCAGGGTACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATTTGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCACTTGCTATAAATGTTGTTGCTGCATTTTCCACTGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTAGCCTTGGCAACTGAACCACCAACTGATTCCCTGATGGATCAACGTCCAATGGGTCGAAGAGAACCTCTCGTATCAAATATTATGTGGAGGAATCTGCTGATACAGGCAATGTACCAAACGTCTGTCTTTCTTATACTTAATTTCCAAGGTGTGAACTTACTGGGTTTGAGGGATGAGCCCAACCGCCCTGCAATCAAAGTGAAGGACTCTCTGATATTTAATGCATTTGTTCTCTGTCAAGTCTTTAATGAATTTAATGCCCGAAAGCCAGATAAATTCAACATATTCAAGGGAGTCACAAGAAACTACCTCTTTATGGGGATAGTGGGAATAACTGTTGTGCTTCAGATTGTCATCATTGAATATCTTGGGAAGTTCACTAAAACTGTCAAGCTTAATTGGAAGCAGTGGCTCATTTCTGTTATTATAGCATTTATCAGCTGGCCTCTTGCTGTGGTTGGAAAACTGATACCAGTACCAAAGGCTCAACTCAGCAACTTTTTCCGAAAACATCTTCCTTGTAGAAGAACTTAA 3219 0.4191 MSFSKGSPGSQSPRDIEAGSPTSFSADFDDGDFSADPFDLTRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEEKKRVLRIVIVHTRAIQAAYRFKAAGQMNGTIKPPSSSTGEFSIGQEQLCSISRDHDTTALQENGGVVGLSHLLKTNLEKGIQGDDADLVKRRNAFGSNSYPQKRGRSLLMFMWDACKDLTLIILMVAAMASLALGIKSEGIQEGWYDGGSIAFAVILVILVTAISDYKQSLQFQDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGVLITGHSLAIDESSMTGESKIVEKNSNDPFLISGCKVADGSATMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGLATLIGIVGLSVAVVVLMVLLARYFSGHTRNPDGSVQFIAGKTKVGDAIDGVIKIFTVAVTIVVVAVPEGLPLAVTLTLAYSMKRMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKKIAPHDKSQFSSILCSLLIEGVALNTNGSVYIPEGGNDVEVSGSPTEKAILEWGIQLGMNFDTARSKSSIIHVFPFNSEKKRGGVAIKTSDSEIHIHWKGAAEIVLACCTWYFDANDQLVKMDEEKMSTFKKAIEDMAADSLRCIAIAYRSYQKENVPTSEELAHWSLPEDDLVLLAIIGLKDPCRPGVKDAVKLCQKAGVKVKMVTGDNVKTAKAIAVECGILDSISDATEPVIIEGKRFRALTDVGREEIVERILVMGRSSPNDKLLLVQALRRKEHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVFANIQKFIQFQLTVNIAALAINVVAAFSTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMDQRPMGRREPLVSNIMWRNLLIQAMYQTSVFLILNFQGVNLLGLRDEPNRPAIKVKDSLIFNAFVLCQVFNEFNARKPDKFNIFKGVTRNYLFMGIVGITVVLQIVIIEYLGKFTKTVKLNWKQWLISVIIAFISWPLAVVGKLIPVPKAQLSNFFRKHLPCRRT 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00731 1072 Pfam Cation transporter/ATPase, N-terminus 142 208 IPR004014 -
Pumo4g00731 1072 Gene3D - 47 101 - -
Pumo4g00731 1072 CDD P-type_ATPase_Ca_PMCA-like 168 923 - -
Pumo4g00731 1072 FunFam Calcium-transporting ATPase 46 102 - -
Pumo4g00731 1072 NCBIfam calcium-translocating P-type ATPase, PMCA-type 133 1054 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Pumo4g00731 1072 Pfam E1-E2 ATPase 262 462 - -
Pumo4g00731 1072 PRINTS H+-transporting ATPase (proton pump) signature 790 806 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo4g00731 1072 PRINTS H+-transporting ATPase (proton pump) signature 636 654 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo4g00731 1072 PRINTS H+-transporting ATPase (proton pump) signature 822 847 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo4g00731 1072 MobiDBLite consensus disorder prediction 1 19 - -
Pumo4g00731 1072 Gene3D - 481 835 IPR023214 -
Pumo4g00731 1072 PRINTS P-type cation-transporting ATPase superfamily signature 484 498 - -
Pumo4g00731 1072 PRINTS P-type cation-transporting ATPase superfamily signature 790 809 - -
Pumo4g00731 1072 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Pumo4g00731 1072 PRINTS P-type cation-transporting ATPase superfamily signature 814 826 - -
Pumo4g00731 1072 PRINTS P-type cation-transporting ATPase superfamily signature 683 694 - -
Pumo4g00731 1072 PRINTS P-type cation-transporting ATPase superfamily signature 705 715 - -
Pumo4g00731 1072 FunFam Calcium-transporting ATPase 684 835 - -
Pumo4g00731 1072 FunFam Calcium-transporting ATPase 494 690 - -
Pumo4g00731 1072 SFLD C1.7: P-type atpase like 466 842 - -
Pumo4g00731 1072 SMART Cation_ATPase_N_a_2 143 214 IPR004014 -
Pumo4g00731 1072 Gene3D - 494 690 IPR023299 GO:0000166
Pumo4g00731 1072 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 491 687 IPR023299 GO:0000166
Pumo4g00731 1072 NCBIfam HAD-IC family P-type ATPase 757 870 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo4g00731 1072 NCBIfam HAD-IC family P-type ATPase 424 511 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo4g00731 1072 NCBIfam HAD-IC family P-type ATPase 229 399 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo4g00731 1072 MobiDBLite consensus disorder prediction 1 28 - -
Pumo4g00731 1072 FunFam Calcium-transporting ATPase 192 249 - -
Pumo4g00731 1072 FunFam Calcium-transporting ATPase 807 1056 - -
Pumo4g00731 1072 FunFam Calcium-transporting ATPase 9 plasma membrane-type 338 508 - -
Pumo4g00731 1072 PANTHER CATION TRANSPORTING ATPASE 110 1054 - -
Pumo4g00731 1072 Pfam Cation transporting ATPase, C-terminus 875 1052 IPR006068 -
Pumo4g00731 1072 Gene3D - 165 360 - -
Pumo4g00731 1072 SFLD p-type atpase 466 842 IPR044492 -
Pumo4g00731 1072 SUPERFAMILY HAD-like 482 895 IPR036412 -
Pumo4g00731 1072 FunFam Calcium-transporting ATPase 239 360 - -
Pumo4g00731 1072 Pfam Ca2+-ATPase N terminal autoinhibitory domain 35 78 IPR024750 GO:0005516
Pumo4g00731 1072 SUPERFAMILY Calcium ATPase, transduction domain A 262 357 IPR008250 -
Pumo4g00731 1072 Gene3D - 192 1044 - -
Pumo4g00731 1072 Pfam haloacid dehalogenase-like hydrolase 481 804 - -
Pumo4g00731 1072 SUPERFAMILY Calcium ATPase, transmembrane domain M 143 1054 IPR023298 -
Pumo4g00731 1072 ProSitePatterns E1-E2 ATPases phosphorylation site. 486 492 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00731 Pumo-Chr4 9439256 9456526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00731 2 1064 Primary Pumps ATPases AT5G57110 69.887 0.0 1527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00731 K01537 - gmx:100790157 1875.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00731 4 9439256 9456526 Pumo4g00731 4 9439256 9456526 ECH