Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00725 ATGGAAGAGAATATAGCGATACAAGAAGCAGCTTCCGCTGGGTTGAAGAGTATGGAGCATCTGATTCGCGTGCTTTCTTCTCAAATCCCTTCTAATTCTTCTGCTTCTGCTTCTGCTTCTTCTGCACACCACCACCGTCTCAATCTCAACCACCTTGACTGCACGGAAATCACCGACTTCACTGTCTCCAAGTTCAAACAAGTCATCAACTTGTTGAATCGCACCGGCCACGCTCGCTTTCGTCGCGCACCTTCTCCTTCAATTTCTCCTCCTTCTCAGCCTCAACCTCAACCTCAACCCCAACCCCAACCCCAACCCCAGGCGCTGACTCTTGATTTTGCAAAACCTGTTATGGTAAAGTCAAATCCCAACCCTAACCCTTCTTCTACCGATTTGTCGGTTTCTCAATATTCAAAGACCAAGGACACCACCACTTTTAGTATATCCCCTCCTATGTCCACCACCACCTCTTCCTTCATGTCCTCCATCACCGCCGACGGCAGCGTCTCCGACGGCAAGATCGGCCCCGCCATCCTCGCCGCCGGCAAGCCCCCTCTCTCTTCATCCCACCGGAAAAGGTGCCACGACGCCACCCTCTCCGCCGGAAAAGCCTCATCCTCCGCTCACTGCCATTGCTCCAAGAGAAGGAAATCTCGTGTGAAACGAATGATTCGAGTGCCGGCGATAAGTTCGAAGATTGCTGATATCCCAGCGGACGAGTACTCGTGGAGAAAGTATGGTCAAAAACCAATCAAGGGATCACCCTACCCACGAGGTTACTACAAGTGTAGTAGCGTGAGAGGGTGTCCAGCGAGAAAGCACGTGGAGCGAGCCCAGGATGACCCCAACATGCTCATCGTTACCTACGAGGGAGAGCACCGTCATCCGCAACCGCGTCTGCCAGAAACTGCTGCCGGCGCCGCCGCGGCTTTTGCCGCTCAGCCTGTTTAA 951 0.5342 MEENIAIQEAASAGLKSMEHLIRVLSSQIPSNSSASASASSAHHHRLNLNHLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSPSISPPSQPQPQPQPQPQPQPQALTLDFAKPVMVKSNPNPNPSSTDLSVSQYSKTKDTTTFSISPPMSTTTSSFMSSITADGSVSDGKIGPAILAAGKPPLSSSHRKRCHDATLSAGKASSSAHCHCSKRRKSRVKRMIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGEHRHPQPRLPETAAGAAAAFAAQPV 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00725 316 ProSiteProfiles WRKY domain profile. 232 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g00725 316 SUPERFAMILY WRKY DNA-binding domain 235 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g00725 316 Gene3D WRKY domain 223 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g00725 316 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 4 300 IPR044810 GO:0003700
Pumo4g00725 316 SMART WRKY_cls 237 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g00725 316 MobiDBLite consensus disorder prediction 81 153 - -
Pumo4g00725 316 MobiDBLite consensus disorder prediction 87 105 - -
Pumo4g00725 316 Pfam WRKY DNA -binding domain 239 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g00725 316 Pfam Plant zinc cluster domain 191 235 IPR018872 -
Pumo4g00725 316 FunFam WRKY transcription factor 65 221 298 - -
Pumo4g00725 316 MobiDBLite consensus disorder prediction 121 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00725 Pumo-Chr4 9382803 9384558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00725 1 302 WRKY Transcription Factor Family AT2G24570 49.240 1.90e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo4g00725 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00725 - - gmx:732589 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00725 4 9382803 9384558 Pumo4g00725 4 9382803 9384558 ECH
Pumo8g01979 8 56409750 56411860 Pumo4g00725 4 9382803 9384558 PCT
Pumo4g00725 4 9382803 9384558 Pumo2g01617 2 30491156 30493369 PCT