Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00719 ATGGAAGACAATGAAGAATGCATCACTGGGCTAAGTTTGGGCCTGGGAATGGGAGGGCATGTCCCAAAAAAGCATAAGCAGAAAGAGAACAAGCCTGTGGCGTGCCTAGACCTAGCGTTTGAGCTTTGTCCAAAAGGGGAAGCCATTAACGGGAATCATGATAAGGTAGAGAGAATCAGCTTGGAGAGAATCCACGAGTACCCTAATGAAAAGAGCACTGATTCTGATAACAGCAACAATAACAACAACAACGGAAGCAGAAAGAAACTGAGGCTTTCCAAGGAGCAATCTGCCATGCTTGAGAACAGCTTCAAACAGCATAGCACTCTTAATCCGGTCCAGAAACAAGCACTTGCTGATCAATTGAATTTAAAAACCAGACAAGTTGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACCAAACTGAAGCAGACAGAAGTGGACCGCGAGTTGTTGAAAAAACACTGTCAAAATCTAAGTGATGAGAACAAAAGATTGAAGAGGGAATTGCAGGAACTACGTGCACTTAAGGTTGGACCGTCGACGCAGCTATGCATTCAACTATCCAAAACGGCAACTCTGACTATGTGTTCTTCGTGCGAGAAACTATTAAAGCTCGATGGAGGAAAAAACAATATAGATCAAGTTAGAGGGTAG 657 0.4323 MEDNEECITGLSLGLGMGGHVPKKHKQKENKPVACLDLAFELCPKGEAINGNHDKVERISLERIHEYPNEKSTDSDNSNNNNNNGSRKKLRLSKEQSAMLENSFKQHSTLNPVQKQALADQLNLKTRQVEVWFQNRRARTKLKQTEVDRELLKKHCQNLSDENKRLKRELQELRALKVGPSTQLCIQLSKTATLTMCSSCEKLLKLDGGKNNIDQVRG 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00719 218 Pfam Homeodomain 87 141 IPR001356 GO:0003677
Pumo4g00719 218 Coils Coil 142 176 - -
Pumo4g00719 218 MobiDBLite consensus disorder prediction 68 92 - -
Pumo4g00719 218 SMART HOX_1 85 147 IPR001356 GO:0003677
Pumo4g00719 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 203 - -
Pumo4g00719 218 SMART halz 143 186 IPR003106 GO:0006355|GO:0043565
Pumo4g00719 218 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Pumo4g00719 218 MobiDBLite consensus disorder prediction 73 87 - -
Pumo4g00719 218 CDD homeodomain 87 144 IPR001356 GO:0003677
Pumo4g00719 218 SUPERFAMILY Homeodomain-like 69 144 IPR009057 -
Pumo4g00719 218 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Pumo4g00719 218 Gene3D - 91 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00719 Pumo-Chr4 9326497 9328019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00719 73 202 Homeobox Transcription Factor Family AT3G60390 63.846 5.44e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pumo4g00719 Homeodomain 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00719 K09338 - gmx:100812222 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00719 4 9326497 9328019 Pumo2g01623 2 30577565 30578937 PCT