Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00707 ATGATTCCAGCCTATCGCCACTCAGTGTCTTCTGTTTTGCCTCTCGATCTTAATGAAGATCATAACCACGAGCTCTTCAGTCCAAACCATCTCGCTTCCTCTTCCTTTTCTTCTCTATCATCATATCCTATTCTCTTCAACCCGCCAAATCATCAAGATCAAGAAGCTGGATCATACTACTGGGAACCAACTAAGCACTTACCAACTGATCAAGAGGCTGAGAAGATTATCCCTACTAGTGGATCATGGGATCACTCGGTGGAAGCTGAAAGTGAGCACAAGGTGACAGTTTGGAAAAAAGAAGATGAGAGGAATGAAAATCTTGAATCATCAGTTGCTGAAGATGGTTCGGAGAAGTGGATGCCTTCGAAGAAGATGAGAATTATGCGGAAGATGTTGGTGTCGAATCAAACTCATCATGATGCATATACTTCAGACAACACTACGCACAAGTTTGATGATCAGAAACAACCACTGTCACCGCTTGGAACTGATAACAGCAGCAACAACTATTCAAACCACAGTAATAACACTGTTAGGGTTTGTGCTGATTGCCACACCACCAAGACTCCTCTATGGAGGAGTGGACCAAGAGGCCCCAAGTCACTTTGCAACGCATGTGGGATTCGACAAAGGAAGGCGAGACGAGCCATGGCAGCTGCTGCAGCATCGGGAAATGGAACAGTTATTGTGGAAGCTGAGAAATCTGTGAAGGGAAACAAGTTGCAGAAGAAAGAGAAGAAGACAAGAATTGAGGGTGCAGCACAGATGAAAAAGAAGCGCAAGCTTGGAGTTGGAGCAAAGCCATCTCAAACTCAAAGTAGAAACAAGTTTGATTTTGAGGATTTGACATTACGCTTAAGAAAGAACTTGGCTATGCATCAAGTTTTCCCTCAGGACGAGAAGGAGGCTGCGATCCTTCTCATGGCTTTATCTTATGGCCTGGTTCATTGA 954 0.4423 MIPAYRHSVSSVLPLDLNEDHNHELFSPNHLASSSFSSLSSYPILFNPPNHQDQEAGSYYWEPTKHLPTDQEAEKIIPTSGSWDHSVEAESEHKVTVWKKEDERNENLESSVAEDGSEKWMPSKKMRIMRKMLVSNQTHHDAYTSDNTTHKFDDQKQPLSPLGTDNSSNNYSNHSNNTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAASGNGTVIVEAEKSVKGNKLQKKEKKTRIEGAAQMKKKRKLGVGAKPSQTQSRNKFDFEDLTLRLRKNLAMHQVFPQDEKEAAILLMALSYGLVH 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00707 317 ProSiteProfiles GATA-type zinc finger domain profile. 176 212 IPR000679 GO:0006355|GO:0043565
Pumo4g00707 317 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 317 - -
Pumo4g00707 317 MobiDBLite consensus disorder prediction 254 273 - -
Pumo4g00707 317 CDD ZnF_GATA 181 209 IPR000679 GO:0006355|GO:0043565
Pumo4g00707 317 Gene3D - 177 277 IPR013088 GO:0006355|GO:0008270
Pumo4g00707 317 SMART GATA_3 176 227 IPR000679 GO:0006355|GO:0043565
Pumo4g00707 317 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 174 216 - -
Pumo4g00707 317 FunFam GATA transcription factor 21 176 265 - -
Pumo4g00707 317 MobiDBLite consensus disorder prediction 141 172 - -
Pumo4g00707 317 Pfam GATA zinc finger 182 215 IPR000679 GO:0006355|GO:0043565
Pumo4g00707 317 ProSitePatterns GATA-type zinc finger domain. 182 207 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00707 Pumo-Chr4 9230850 9232652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00707 90 317 C2C2-Gata Transcription Factor Family AT4G26150 37.743 1.39e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo4g00707 GATA 4.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00707 - - gmx:100810698 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00707 4 9230850 9232652 Pumo4g00707 4 9230850 9232652 ECH
Pumo4g00707 4 9230850 9232652 Pumo2g01627 2 30681760 30687030 PCT