Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00701 ATGGCCCCCAGAATCCTACTATGCGGCGACGTTTTAGGCCGCCTCAACCAGCTCTTCAAGCGCGTCTCATCGGTGAACAAATCCGCAGGTCCATTCGACGCGCTCTTGTGCGTGGGTCAGTTCTTCCCTGACTCACCGGAACAGTTGGAGGAGTTCACGAAATACATCGAAGGTGGCTCCCACATTCCTCTCCCGACATACTTCATCGGCGACTACGGCGTCGCCGCCCCCAAAATTCTCTTGCAAGCTTCCAAGGACTCCGCCAACTGCGGCTTCAAGATGGACGGCTTCAAGGTTTGCCACAACTTGTATTGGTTGAAAGGAAGTGGCAAATTCCCCCTCTTCGGGTTATCCGTGGCGTATTTATCTGGAAGGAAGTCATCTAGTGCTCAACAATTTGGAACTTACACTGAAGATGATGTTGATGCCTTGCGCGCAATTGCTGAGGAACCTGGAGTTGTTGATTTGTTCTTGACTAACGAATGGCCGAGTGGGGTCACCAATAGAGCAGCTGATTCGGACATTCCTGCTGGACTCTCTGATGCTGTAGGCAGTGATCCAACCGTATCGGAGTTAGTACAAGAGATCAAACCACGTTATCACATTGCAGGCACTAAAGGTATATACTATGCCCGTGAACCATATTCCAATGTTGATGCTGTGCATGTCACTCGTTTCATAGGGCTTGCGTCTGTTGGAAATAGAGATAAGCAGAAATTTATTCATGCAATCTCCCCCACACCTGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAACCACAAATACCACCTTATCGCCATACACATTTGTGGAGAAAAGAACTTCTCCAATGGATTCAACAAAGAGATCCAGTGATTCTATCTCTGATCCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAAAAACATGAAGCTGAACACGGTGATAAATTGTGTTTCAAATTTGTTTCTTCTGGCTCTTGTCCACGAGGAGAGAAGTGCAATTTTCGACATGATATAGATGCAAGGGAGCAGAGTATGAGAGGTGTTTGTTTTGATTTTTTGAACGAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTCAGGCACAGCTTGCAGGATGAGGGTGACAGGCTTCCTTCTAGGAGGTCTGGATCTGGCAGGTCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCGAATGTGGAGTCACATTTAATCATAAGCATTGGGGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTTGTTGAGGACCATGTACTTATAATACCAGTTGAGCATATGCCTAATACCTTGTCTATGTCTTCTGAATCTGAAGTTGAGCTCTCTAGGTTTCAAAACAGTCTCAAGAGTTACTGCAAGAGCCAAGAGAAGGAAGTCGTCTTTTTTGAGTGGGTCTCCATACGTGGCACTCATGCCAATCTTCAGGCCATTCCCATTGCATCTTCCAAAGCAGTAATGGTTGAAAAAGTTTTCAATTTAGCTGCACAGAAGTTGGGATTTAAATTTGTGGCTAAGAAATTTGATAGCATTTCTGATGGAAGGAAGTTTTTGAAGGCTCAAATTGATGGGGATTCAAGCTTGTTCTATGCTCAAATCCCAGGAGGCACAATTCTGCTGCATCATGTTGAAGAGAACGAGAAATTTCCTGCCCAATTTGGTCGTGAGGTTCTGGCTGGGTTGCTTAATATGGCAGATAATGCTGATTGGAGGAATCGCAAACATAGCAAAGATGAAGAAATGAAAATTGTTGAAGATTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGTTAG 1806 0.4463 MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPEQLEEFTKYIEGGSHIPLPTYFIGDYGVAAPKILLQASKDSANCGFKMDGFKVCHNLYWLKGSGKFPLFGLSVAYLSGRKSSSAQQFGTYTEDDVDALRAIAEEPGVVDLFLTNEWPSGVTNRAADSDIPAGLSDAVGSDPTVSELVQEIKPRYHIAGTKGIYYAREPYSNVDAVHVTRFIGLASVGNRDKQKFIHAISPTPASTMSSTEIAMKTTNTTLSPYTFVEKRTSPMDSTKRSSDSISDPQYWRYDVSQKRQKHEAEHGDKLCFKFVSSGSCPRGEKCNFRHDIDAREQSMRGVCFDFLNEGKCERGPDCNFRHSLQDEGDRLPSRRSGSGRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPNTLSMSSESEVELSRFQNSLKSYCKSQEKEVVFFEWVSIRGTHANLQAIPIASSKAVMVEKVFNLAAQKLGFKFVAKKFDSISDGRKFLKAQIDGDSSLFYAQIPGGTILLHHVEENEKFPAQFGREVLAGLLNMADNADWRNRKHSKDEEMKIVEDFKSRFQEYDPNC 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00701 601 Gene3D - 298 370 - -
Pumo4g00701 601 Pfam Protein similar to CwfJ C-terminus 2 510 598 IPR006767 -
Pumo4g00701 601 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 600 IPR040194 -
Pumo4g00701 601 SUPERFAMILY HIT-like 386 454 IPR036265 -
Pumo4g00701 601 CDD MPP_CWF19_N 6 232 - -
Pumo4g00701 601 Gene3D - 382 482 IPR036265 -
Pumo4g00701 601 Pfam Protein similar to CwfJ C-terminus 1 384 495 IPR006768 -
Pumo4g00701 601 ProSiteProfiles Zinc finger C3H1-type profile. 314 337 IPR000571 GO:0046872
Pumo4g00701 601 SMART c3hfinal6 311 336 IPR000571 GO:0046872
Pumo4g00701 601 SMART c3hfinal6 343 368 IPR000571 GO:0046872
Pumo4g00701 601 SUPERFAMILY CCCH zinc finger 312 338 IPR036855 GO:0046872
Pumo4g00701 601 ProSiteProfiles Zinc finger C3H1-type profile. 346 369 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo4g00701 CwfJ_C_1 4.4e-37 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00701 K24939 - gmx:100782106 1150.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00701 4 9141011 9146448 Pumo4g00701 4 9141011 9146448 ECH